Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02120 ATGGAAGGTGGTTGTTCAGAAGAAGAGGAGAAGAACAAGAACAACAAGTCACTAGAGGAAGAGAACAAGGTTAAACGCAAAATGAAGTCTGCTTCACAGTTAGAGATTCTTGAAAAAACATATGCTGCTGAGTCTTACCCTTCTGAAGCAATGAGGGCTGAGTTATCTGTCAAGTTAGGTTTGTCTGATCGTCAGTTGCAGATGTGGTTCTGTCACCGGAGACAGAAGGATAGGAAGGCTACACTGGTGGTGGTTAAGAACGAGGTCACGCTAACTCCGCCTTCATTCGAGGAGGGTATTGAGCAAATACCAGTTGCTGATGTTAGGCATCATGATCATGGTTTGGTTTCTGTCTTGAGACCAATTGGTCATGTGGACTCGCCGCGATTTGTGGCACAGCACGGGTTGATGGCATTTCCTAGGATGTTGGCATTGCCTGCAATGGATAGCAGTAGTTACCATGAAGCACATCGGACTATACAGGAGCTGCGAGTTGTTGCATTTGTGGAAAGACAATTGGGGGAGCCATTGAGAGAGGACGGACCCATTCTTGGGATGGAATTTGATTCCCCGCCTCCTGGTGCATTTGGTGGACGATTAGGGGCAGTGGCAATGGGGCAACACAGGCAACCTGAATGGCCTGTTGAGGAAAAAGTTTATGAACATTTGGATAAGGGAATTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAGAAATGAGATATACGAGACAGTTACTACTGCATCTATCCACTTTAGTTCTCTTGATGGTGTTGCACATTCTAGGACATCACTATCTAGTGGGCCATCTTTTCTTGATGGGAATGAATCTGCACCTAAGGTGTATGGAGTCCAAGGAGGGAATGCTGATGTTCCACGAAAGAACCCATTTGCCAATGTAATTCTTGACATTCAAAGGGGGGCTCTCCAAGTAACTCCGATTGACGGCCCTCTAGTGCCATCTGATAGGAGGGTTATCCATGAGGAAGAACTTTCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGAATGCAACGGGAACTTGAAGTGCAAGAGAAAAGAATTAGAAAAGAGCTCGTAAAACAGGATATTTTAAGGCAAAAGAGAGAGGAGCAAATAAAGAAAGAGATGGAGAGGCAAGAACGTGAAAGGCAGAAGGAAGAGGAAAGGTTACTGCGTGAAAGACAGCGAGAGGAGGATAGGCTCCTTAGAGAACAGAGACGAGAGCAGGAGCGGCGGGAGAAGTTTTTGCAGAAGGAGTCAATCAGAACTGAGAAACTGAGACAGAAGGAAGAACTACATAGGGTGAAAGAGGAGGCAAGGATTAAAGCTGCCAGTGAGAGAGCCATTGCCCGCAGAATGGTCGACCTTATTGAAGATGAACGTCTGGAACTCATGGAATTAGCTGCATCAAAGAAGGGGCTATCTTCAATACTGGCTCTTGATGATGAAACTATGCAAAATCTTGAATCATATGGAGATGGGCAGACTTCCTTCCCGCCCAAGTCTGTACAGTTGAAAAGAGCTTTTTCAGTTCAACCTTGGTCAGATTCTGATGAGAATGTAGGAAATCTTCTAATGGTTTGGAAATTCTTGATTACCTTTGCTGATGTTCTGGGAATATGGCCGTTTACCTTGGATGAGCTTATACAAGCTTTTCATGACTATGACCCTAGGATGTTAGGTGAGGTCCATATTGCTCTTCTGAGATCCATTATAAAAGATATTGAAGATGTTGCAAGAACACCCACTACTGGGTTAGGAGCTAACCAAAACAGTGTTATGAACTCTGGTGGGGGGCATCCACAAGTAGTTGAAGGGGCTTATGTATGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCATTAACATGGCCGGAGATTTTGCGACAATTTGCATTGTCAGCTGGATTTGGGCCGCAGTTGAAGAAACAGAGTATTGAGCAAGCGCATCCTAGCAACGATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTACGCAGTGGAGCTGCTGTTGAAAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAATCCTAGAAGACATAGGCATCGTTTGACGCCTGGAACTGTTAAATATGCTGCATTTCATGTCCTGTCTCTGGAAGGAAGCAGAGGCCTCAATATATTGGAAGTTGCAGATAAGATTCAGAAATCTGGACTCCGTGATCTTACAATAAGCAAAAATCCAGAGGCTTCTGTAGCTTCTGCTTTGTCTAGAGATACAGAGCTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGTATATAGAAAGGACCCTGCTGATTCTGAAGCAATTTATTCAGCTGCCAGGGAAAGAATCAGGATATTTAAAAGTGGATTTGTGGGTGCAGAAGAAGCTAATGATGGTGAAAGGGATGAAGATTGTGAAAGTGATATGGCAAAAGATCCCGAGATTGATGATTTAGGAGCTCAACCAAATGCAAAAAAGGAGGTTTCAAATTATGAGGAATTTAATGCAAACACTGTCGTGAGAAGTGGGAAAAACAATGATGAGGTTTTGCAAACTCCCCAAAGTTGCCATGAGAAAGTGGATGAGGGTTTAAGATCAACTGTTGATGAAGGTTTCAATGAACATAAAGATGTTTGTATATCTAGTAAAATTACTGTTTGCAGCAAAGATGTTGCTAATCCTATTCTAAAAGGCGTGGATGTTGATGAAAACACTCTTGGTGAACCATGGGTACAAGGGCTTATGGAGGGAGAGTACTCAGATCTTAGTGTAGAGGAGCGTCTTCATGCTCTTGTTGCTTTGATTACTGTGGCAATTGAAGGAAATTCTATCCATGTTGTGCTGGAGGAACGTCTAGAAGCCGCAAATGCTTTAAAGAAACAGATGGGGGCTGAGGCACATCTTGATAAACGGCGTATTAAAGAGGATTATTTTGTTAAAATGCAGTCTTCCTCATATTTGAAAAACAAGAATGAACCAGCTGTTGCAATTCCATCAGTAGGCGGTAAACAATGCACATTGCATACTGAGGATGTCGAAAATGATAAGGCTTTACTCACTCCCTGTGACCGGCATGAACAGATAAATGCACTACAGGAAAAGGAAAATCTTCTGCAGAGTTCCTTATTAGAAGGGAATATGCAGAAGCAAGATTGTTCTACAGGCCCGGATAATTATTCAATCCAACAAACTATATATGCTTCTGAAAGATCAAGGTCAAATTTAAAATCATACATTGATCACTTGGCTGAACAAACTTACATGTGTAGATCATTGCCTCTTGGTTTGGATCGGAGAAGAAACCGATACTGGCAATTCACTACTTCTGCTTCTCAAAATGATCCAGGTTGTGGTAGGATTTTTGTGGAATTGCATGATGGCTGTTGGAAGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTATTGGTATCATTGGACGTACGTGGGGTCAGGGAATCTCACTTGCATATGATGTTGCAAAGAATTGAAATGTCCTTCAAAGAATCTGTTAGAAGAAATGTCCAAAATGGACACACTGTCAAGAAACTCGATACAGAAGCAGTTAAAATAGCTACAGCTTCCGCATGCATTGATGATTTGAACACATCAGTGGCGTCAACATCTTTTACGGTTCAGCTTGGAAGAAATGAGGTTGAGAACAAAGATGCTTATATGAGATATTGGGACTTTGAGAAATGGATGCGAAAGGAATGTCTAACATCTTGGGAAAAAGACAAGTTTGGGAAGAGGAGGTGCAACCAACTACTTTACATGTGTGATTGGTGCCATCATGTCTTTTTCTTTAGAGGATCACTGTGTCCTTCATGCGATGGAATAGCTCTCAGTACTAGTCAGGGGAACTATTCATCCTCTTCTCCAATGAGGATGAGATTGCTCAAAATCATCTTGTCAGTTGTTGAGGCAACCCTTCCTCAAGAAGCTCTGCAACCTTTTTGGACAGAGAGGTACAGAAAGTCTTGGGGTTTAAAACTGGAAGCTTCCTCATCAACTGAAGACATTCTGCAGATGTTGACTGCATTGGAAGGTGCTATAAAAAGGGAGTATTTGGCTTCAGACTATGAAACTACCAGTGAGCTGTTAGGTTCAGTTTGCTCGTCCAGTTGTCTCCCTAATGATACCATTGGTGGTGGAAGGATACCTGTGCTTCCATGGGTGCCATATACAACTGCTGCTGTGGCTCTGAGGCTCATGGAACTTGATACATGCGCCTTTTACACCTCACAGCAGAAGCTAGAGTCCAAGGATAAAAAAGTTGGAATTGTTGTGAAGCTTCCATCAAAATATGCTGCTGCCAAAAATTCCTACGATGCTGGTGCAATTGAAACTTCATTTCAGGCTAAGCATACTGTAGAGAACCGGCGTGCTCTTGGGGGTGTTCTTGGTGCTGGCCTCGAGAGCTGCAGCAGACGCCAAAGGACTCGTCAAGACCGCAGCCATTCTCGTGATCAAAGATCACAGGGAAGAGTTGTTAGTTCCAGATCAACATCCAGAAAGAGAAGCACTACCAGTACATCTAACAGTAGGAAAAAAGATAGCAGGATAGGAAAATTACTTGGATGGAAAGGGACACCGAACATTCGTGGTCGGAGAAGCATCAGAAGCAGGCAGAAACCTGAAGCCAAGATGGATGTGATCATAGAGGAGATGAATGAAGGTGAAAGTGAAACAGAAGCCAATGCGCGGAATGCTAGTAGTTTGGAAAGATCAGACTATGAAGGCGAACTTTATCGAGCAACAGATGAGTATCATCATCTGGTAGATAATAATAATAATATTAATGTTGATGGATGTAAGGATGGATTTAGTGGGAAATCTGAGAACTTAATAGAACAAAGCCATTATAATGTGGATGATGAGAACGATGTGATTATGGATGACAATAATAGCGAGGAAGATGAGGAAGATGGGCAAGTCGATCTTAATACCGAAGATTATATAATTGGAGGGGACTCAGATACAGGGTACAACAGAGAAGAAAATGAAGAACACGAGGATCTAGATGGAGATTGTTCTACATCATCAGATTGCAGTGATTAA 5094 0.4242 MEGGCSEEEEKNKNNKSLEEENKVKRKMKSASQLEILEKTYAAESYPSEAMRAELSVKLGLSDRQLQMWFCHRRQKDRKATLVVVKNEVTLTPPSFEEGIEQIPVADVRHHDHGLVSVLRPIGHVDSPRFVAQHGLMAFPRMLALPAMDSSSYHEAHRTIQELRVVAFVERQLGEPLREDGPILGMEFDSPPPGAFGGRLGAVAMGQHRQPEWPVEEKVYEHLDKGISRTLHEYQFIPEQPTVRNEIYETVTTASIHFSSLDGVAHSRTSLSSGPSFLDGNESAPKVYGVQGGNADVPRKNPFANVILDIQRGALQVTPIDGPLVPSDRRVIHEEELSRFQRKRKNEEARMQRELEVQEKRIRKELVKQDILRQKREEQIKKEMERQERERQKEEERLLRERQREEDRLLREQRREQERREKFLQKESIRTEKLRQKEELHRVKEEARIKAASERAIARRMVDLIEDERLELMELAASKKGLSSILALDDETMQNLESYGDGQTSFPPKSVQLKRAFSVQPWSDSDENVGNLLMVWKFLITFADVLGIWPFTLDELIQAFHDYDPRMLGEVHIALLRSIIKDIEDVARTPTTGLGANQNSVMNSGGGHPQVVEGAYVWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKQSIEQAHPSNDEGNDGKDIISNLRSGAAVENAVAIMQEKGLSNPRRHRHRLTPGTVKYAAFHVLSLEGSRGLNILEVADKIQKSGLRDLTISKNPEASVASALSRDTELFERTAPSTYCVRPVYRKDPADSEAIYSAARERIRIFKSGFVGAEEANDGERDEDCESDMAKDPEIDDLGAQPNAKKEVSNYEEFNANTVVRSGKNNDEVLQTPQSCHEKVDEGLRSTVDEGFNEHKDVCISSKITVCSKDVANPILKGVDVDENTLGEPWVQGLMEGEYSDLSVEERLHALVALITVAIEGNSIHVVLEERLEAANALKKQMGAEAHLDKRRIKEDYFVKMQSSSYLKNKNEPAVAIPSVGGKQCTLHTEDVENDKALLTPCDRHEQINALQEKENLLQSSLLEGNMQKQDCSTGPDNYSIQQTIYASERSRSNLKSYIDHLAEQTYMCRSLPLGLDRRRNRYWQFTTSASQNDPGCGRIFVELHDGCWKLIDSEEGFDALLVSLDVRGVRESHLHMMLQRIEMSFKESVRRNVQNGHTVKKLDTEAVKIATASACIDDLNTSVASTSFTVQLGRNEVENKDAYMRYWDFEKWMRKECLTSWEKDKFGKRRCNQLLYMCDWCHHVFFFRGSLCPSCDGIALSTSQGNYSSSSPMRMRLLKIILSVVEATLPQEALQPFWTERYRKSWGLKLEASSSTEDILQMLTALEGAIKREYLASDYETTSELLGSVCSSSCLPNDTIGGGRIPVLPWVPYTTAAVALRLMELDTCAFYTSQQKLESKDKKVGIVVKLPSKYAAAKNSYDAGAIETSFQAKHTVENRRALGGVLGAGLESCSRRQRTRQDRSHSRDQRSQGRVVSSRSTSRKRSTTSTSNSRKKDSRIGKLLGWKGTPNIRGRRSIRSRQKPEAKMDVIIEEMNEGESETEANARNASSLERSDYEGELYRATDEYHHLVDNNNNINVDGCKDGFSGKSENLIEQSHYNVDDENDVIMDDNNSEEDEEDGQVDLNTEDYIIGGDSDTGYNREENEEHEDLDGDCSTSSDCSD 1697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02120 1697 MobiDBLite consensus disorder prediction 1637 1697 - -
Trre8g02120 1697 MobiDBLite consensus disorder prediction 808 836 - -
Trre8g02120 1697 Coils Coil 8 28 - -
Trre8g02120 1697 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Trre8g02120 1697 Coils Coil 426 446 - -
Trre8g02120 1697 Gene3D - 3 82 - -
Trre8g02120 1697 MobiDBLite consensus disorder prediction 1484 1560 - -
Trre8g02120 1697 MobiDBLite consensus disorder prediction 1640 1659 - -
Trre8g02120 1697 MobiDBLite consensus disorder prediction 816 833 - -
Trre8g02120 1697 Pfam Homeodomain 25 79 IPR001356 GO:0003677
Trre8g02120 1697 MobiDBLite consensus disorder prediction 1506 1521 - -
Trre8g02120 1697 ProSiteProfiles HARE-type HTH domain profile. 707 776 IPR007759 GO:0006355
Trre8g02120 1697 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1697 IPR044977 GO:0006357
Trre8g02120 1697 CDD homeodomain 23 79 IPR001356 GO:0003677
Trre8g02120 1697 SMART HOX_1 22 84 IPR001356 GO:0003677
Trre8g02120 1697 Coils Coil 330 357 - -
Trre8g02120 1697 MobiDBLite consensus disorder prediction 1488 1505 - -
Trre8g02120 1697 Coils Coil 373 420 - -
Trre8g02120 1697 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1102 1174 IPR028941 -
Trre8g02120 1697 SMART testlast3 526 585 IPR018501 -
Trre8g02120 1697 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 920 960 IPR028942 -
Trre8g02120 1697 Pfam DDT domain 527 582 IPR018501 -
Trre8g02120 1697 Pfam HB1, ASXL, restriction endonuclease HTH domain 707 774 IPR007759 GO:0006355
Trre8g02120 1697 ProSiteProfiles DDT domain profile. 526 585 IPR018501 -
Trre8g02120 1697 MobiDBLite consensus disorder prediction 1 30 - -
Trre8g02120 1697 SUPERFAMILY Homeodomain-like 20 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02120 Trre-Chr8 17019000 17033218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02120 21 1464 Homeobox Transcription Factor Family AT5G44180 49.502 0.0 1248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre8g02120 WSD 3.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02120 - - gmx:100797480 1983.38