Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02119 ATGGGTGTAGACTACTACAAAATCTTGCAGGTTGATAAGAATGCCAATGATGAAGAATTAAAGAAGGCTTATAGGAAACTTGCCATGAAATGGCACCCTGATAAAAATCCAACCAACAAAAAAGAAGCAGAAGCTAAGTTCAAACAAATTTCTGAAGCCTATGATGTACTTAGTGATCCTGAAAAGAGAGGTATCTATGATCAATATGGGGAAGAGGGATTAAAGCTGTGTTGCCTAGAGTTTTTTGGATTCTCAAGTCCATTTGGTGGCATGGGTGGAAGAGGTGGCGGTGGCAGCGGCATGAGATCTAGGTTCCCTGGTGGAATGTTTGGTGATGATATGTTTGGTTCTTTTGGGGAAGGAGGAGGAATACATGTGAATCAAAGTGCACCTCGCAAAGCTCCTGCTATTGAGAACAAGTTGAGTTGCACTCTTGAGGAGATATATAGAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATAGTTGATGCTAGTGGCAAAACCATGCCAGTTGAAGAAATATTGACCATAACTGTGAAGCCTGGTTGGAAGAAAGGGACAAAGATCACCTTTCCAGAGAAGGGTAACGAACAACCAAATGTAACCGCTGCGGATCTTGTTTTTGTGATCGATGAAAGGCCGCACAGCATCTTCAGTCGCGAAGGGAACGATTTGATTGTGACTCAAAAGATATCTCTTGCAGAGGCCTTAACTGGTTATACAGTGCACATCACAACACTAGATGGTAGAAAATTAAGCATACCAATCAACAATGTCATCCATCCTAACTATGAGGAGGTTGTCCCAAAAGAAGGAATGCCAATCCCCAAGGATCCATCAAAGAAAGGGAATTTGAGGATAAAGTTTAACATTAAGTTCCCTACTCGACTCACTGATGAACAAAAAGCAGGAATTAGAAAACTCTTGGCTGCCTCAGGCTGA 945 0.4169 MGVDYYKILQVDKNANDEELKKAYRKLAMKWHPDKNPTNKKEAEAKFKQISEAYDVLSDPEKRGIYDQYGEEGLKLCCLEFFGFSSPFGGMGGRGGGGSGMRSRFPGGMFGDDMFGSFGEGGGIHVNQSAPRKAPAIENKLSCTLEEIYRGTTKKMKISREIVDASGKTMPVEEILTITVKPGWKKGTKITFPEKGNEQPNVTAADLVFVIDERPHSIFSREGNDLIVTQKISLAEALTGYTVHITTLDGRKLSIPINNVIHPNYEEVVPKEGMPIPKDPSKKGNLRIKFNIKFPTRLTDEQKAGIRKLLAASG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02119 314 Gene3D DnaJ domain 3 127 IPR036869 -
Trre8g02119 314 CDD DnaJ 4 59 IPR001623 -
Trre8g02119 314 FunFam DnaJ subfamily B member 13 216 296 - -
Trre8g02119 314 SUPERFAMILY HSP40/DnaJ peptide-binding domain 131 227 IPR008971 GO:0006457|GO:0051082
Trre8g02119 314 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 310 - -
Trre8g02119 314 SUPERFAMILY Chaperone J-domain 3 118 IPR036869 -
Trre8g02119 314 Gene3D - 135 214 - -
Trre8g02119 314 PRINTS DnaJ domain signature 24 39 IPR001623 -
Trre8g02119 314 PRINTS DnaJ domain signature 6 24 IPR001623 -
Trre8g02119 314 PRINTS DnaJ domain signature 62 81 IPR001623 -
Trre8g02119 314 PRINTS DnaJ domain signature 42 62 IPR001623 -
Trre8g02119 314 Gene3D - 216 296 - -
Trre8g02119 314 Pfam DnaJ domain 4 67 IPR001623 -
Trre8g02119 314 CDD DnaJ_C 137 298 - -
Trre8g02119 314 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Trre8g02119 314 SUPERFAMILY HSP40/DnaJ peptide-binding domain 219 304 IPR008971 GO:0006457|GO:0051082
Trre8g02119 314 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Trre8g02119 314 SMART dnaj_3 3 62 IPR001623 -
Trre8g02119 314 Pfam DnaJ C terminal domain 137 295 IPR002939 -
Trre8g02119 314 FunFam Dnaj homolog subfamily b member 133 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02119 Trre-Chr8 17011078 17013161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02119 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.41e-09 57.0