Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02108 ATGGCAGTATCTGATGGAGTTCAAACCCCAACCCCAACCCCTCAGATGGTTGGCAATGCTTTTGTCGAGCAGTATTACTCGATTCTTCACCGTGAGCCCAATCATGTTCATAGGTTTTACCAAGATTCAAGTGTCATGAGTCGTCCTGAAGAAGACGGTACCATGACAACTGTCACTACCACTGATGAAATTGATAAAAAGATACAATCTCTTGATTTCACAAGCTTTAGGGTAGAGGTTCTGAGTGCTGATGCTCAGCCTTCATATAATAACGGGGTAATGGTTGCTACGACTGGCTGCTTGATCGGAACTGACAATGTTAAACGCAAATTTGCTCAGTCCTTTTTCCTAGCTCCACAGGACAACGGCTTCTATGTTTTGAATGATGTTTTTAGATATGTTGATGCGTATAAGTCTGTTGATATTGAGCCTGTACCAGCAAATGTTGCTGATGAAAGTGCTCCATCAGAAGCTTTTACTCCAAATCCTGAGCCTATTCATGTTGCTGAAGACATTCCACCCAGTCAACCTGTTGTTATTGCTGATACTGACACTAACATCAGCAAAGAAGTGAGCTTACCACTGGAGAATGGAAAATTATCAGTTACTGAAAATGTGATTCCTGTTAATCATGTTAAAGAGTCAAGTCATCAGGAACAACCCGCAAGCATTGAGAAAGTTCCTTCAAATACACAGGAAGATGCTCCCAAAAAGTCTTTCGCATCCATTGTGAATGCCTTGAAAGATAATTCTGCTCCCTTCCATTTGAGGACTTCTCCTGCAAAACCCGCTGTGCAACCACCCCGTGTACATAGCGTGCCTGCTCCTGAAGCACCAGCCCCTAACATGGACATTCCGTCGGAAAGGAATAATGAGAATGGAGGTAGGGCTCATGCAATATTTGTTGCGAATTTGCCTATGACTGCAACAGTGGAACAATTGGACCGGGTTTTCAAGAAATTTGGGCCCATCAAGCGTGATGGTATTCAAGTTAGAAGTAACAAGCAACAGGGATCTTGCTTTGGATTTGTGGAATTTGAATCTGCTGCTTCACTGCAAAGTGCCCTAGAGGCCTCTCCTCCTGTTATGTTGGACAACCGTAGGCTTTCCATTGAAGAAAGGCGAGGACGTGGTGGATACCGAAATGACAGAAATGATAACTTCAGAGGCCGTGGCAACTTTGGTGGCGGCCGTGGTGGTGGCTTTAATGGAAGGAACGATTTTGACAGGCGAAGTGAGTTCTCTGGCCGACCTAGAGGAGGCAATAATACCGGTCGAAGCAATGGAGATGCCGCGCCAAGGAGTTATCAGAATGGAGGAGGAAAAGTCGCTGCTCGTCAACAACCGCCAGTGAAGGTTCAGTAA 1365 0.4505 MAVSDGVQTPTPTPQMVGNAFVEQYYSILHREPNHVHRFYQDSSVMSRPEEDGTMTTVTTTDEIDKKIQSLDFTSFRVEVLSADAQPSYNNGVMVATTGCLIGTDNVKRKFAQSFFLAPQDNGFYVLNDVFRYVDAYKSVDIEPVPANVADESAPSEAFTPNPEPIHVAEDIPPSQPVVIADTDTNISKEVSLPLENGKLSVTENVIPVNHVKESSHQEQPASIEKVPSNTQEDAPKKSFASIVNALKDNSAPFHLRTSPAKPAVQPPRVHSVPAPEAPAPNMDIPSERNNENGGRAHAIFVANLPMTATVEQLDRVFKKFGPIKRDGIQVRSNKQQGSCFGFVEFESAASLQSALEASPPVMLDNRRLSIEERRGRGGYRNDRNDNFRGRGNFGGGRGGGFNGRNDFDRRSEFSGRPRGGNNTGRSNGDAAPRSYQNGGGKVAARQQPPVKVQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02108 454 CDD RRM_SF 300 372 - -
Trre8g02108 454 SMART rrm1_1 299 372 IPR000504 GO:0003723
Trre8g02108 454 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Trre8g02108 454 Gene3D - 6 138 - -
Trre8g02108 454 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 425 IPR039539 -
Trre8g02108 454 MobiDBLite consensus disorder prediction 417 434 - -
Trre8g02108 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 369 IPR000504 GO:0003723
Trre8g02108 454 Gene3D - 286 414 IPR012677 -
Trre8g02108 454 MobiDBLite consensus disorder prediction 259 282 - -
Trre8g02108 454 FunFam Nuclear transport factor 2 family protein 8 137 - -
Trre8g02108 454 SUPERFAMILY RNA-binding domain, RBD 287 405 IPR035979 GO:0003676
Trre8g02108 454 MobiDBLite consensus disorder prediction 213 235 - -
Trre8g02108 454 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Trre8g02108 454 MobiDBLite consensus disorder prediction 375 454 - -
Trre8g02108 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Trre8g02108 454 CDD NTF2 13 135 IPR018222 -
Trre8g02108 454 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Trre8g02108 454 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02108 Trre-Chr8 16946154 16948964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02108 300 391 Eukaryotic Initiation Factors Gene Family AT1G34140 29.348 8.56e-06 45.8