Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02090 ATGAAGCTACGGCTTCAAATCTTTCTCATTTCTCTTCTCCTCATGTTACTCCTCCCATTTTCTTCTTCATCAAAACCCAATAACCCACTCCTTGGAATCTCACCCCAAGATGAAAAATATTTCAAGTCTTCCGATGTAATTAGATGTAAAGATGGATCCGCAAATTTCAACAAAGATCAGCTCAATGACGATTTCTGTGACTGCCCCGATGGCACCGATGAGCCTGGTACATCGGCATGTCCGCGCGGAAAATTTTATTGTCGAAATGCTGGGCATTCCCCTGTGTATCTGTTTTCGTCTAGAGTGAATGATGGAATTTGCGATTGTTGTGATGGAAGTGATGAATATGATGGTAAAGCAAAGTGCCCAAATACCTGCTGGGAGGCTGGGAAAGTTGCTCGAGATAAGCTGAAAAAAAAGATTGCCACATATCAAGAGGGTGTCAAAGTGAGAAAGCAAGCAATTGAACAAGCACATTTAGCTCTGGAGAAGGATGCGGCAGAGCTTTCAAAATTGAAAAAAGAAGAAAGTATACTTAAAGGGGTTGTGAAACAGCTAAAGGATCATAAAGAACAAATAGACAAGGCAGAGGAGAAGGAGCGCTTACAGAAGGAAAAAGAAGAGAAGCAGAAGAAGGAGGCTGAGGAGAAGGCTAATGAAAAAAATAATAAAGCCGATGAAGAAGATAAAGGACTTGAAAATGAAGCTGAAAAGCATTCACACGTTGACGATGATTCTGCGGCAAGTAACCATGAGAAAATTGAAGTTCAAGAGGATTCTCCGGTTTATCAGGATGAAGCTGAGGAAAACTTAGCCGACACACTTGATAATATTGTTGAAGCCACTGGAAGTGAAGGATCCTTGCTTAATAAAGCGGAAGAGAATGCAAAAGAATCCGAGAGAGAACCTGCCGTTGAATCTGAAACTGATTTGAAGACTGGAAAGCCAGAGTCTTCTGAAGAAGTCATCAATAAGGAGAAAGATGTATCGGATAATCCTGATGGATTATCAAAGGAAGAATTGGGTAGACTTGTTGCTTCTCGTTGGACAGGAGAAGATGTTGGTAAGAAAAGTGCTGAAGCTGACACTGCATTAGACAATGAGGATCAGGAAGATACTTCACACGGGACAAATATAGAAGAAGATGAAGGATATGCTTCTGACACTGACGATGACAACCACAAATATGATGAAGATGTAAATGATGATGAATTTCAAGAGGATGAGCACGACGACCTTAGTTCCTCATACAAATCTGACGTTGAGACTGAAACAGACTTTTCAGATGTTAGCACAACAGACGATCCTTCTTGGTTAGAGAAAATACAGAAATCTGTGTGGAATATGTTTCAAGCCGTTAATATATTCCAGACACCAGTGAACCAGTCAGATGCTGCTCGTATACGCAAGGAATATGACGAATCAAGTACCAAGTTGTCTAAAATATCAAGCCTGACACAAAAGCAAAAACTTGATTTTGGTCCAGCAAAGGAGTTTTATTCATTCTATGATCGTTGCTTTGAGAGCAAGCAGAACAAGTACATTTACAAAGTCTGCCCCTATAAGCAGGCTACTCAGGAGGAGGGTCATTCCACCACCCGTTTGGGTCGCTGGGACAAATTTGAGGATTCATACAAAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAACGGTCCTGATAGGAGTTTGAAGGTCAAACTTAAATGCGGATTGACAAATGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAGTACGTAGCTTTACTAGCTACCCCGGCCCTTTGTCAGGAAGAAAAGCTGAAGGAGTTACAACACAAGCTAGACTTACTGAATTCAGAAATACCGGAAAGCCATGATGAGTTGTGA 1872 0.4113 MKLRLQIFLISLLLMLLLPFSSSSKPNNPLLGISPQDEKYFKSSDVIRCKDGSANFNKDQLNDDFCDCPDGTDEPGTSACPRGKFYCRNAGHSPVYLFSSRVNDGICDCCDGSDEYDGKAKCPNTCWEAGKVARDKLKKKIATYQEGVKVRKQAIEQAHLALEKDAAELSKLKKEESILKGVVKQLKDHKEQIDKAEEKERLQKEKEEKQKKEAEEKANEKNNKADEEDKGLENEAEKHSHVDDDSAASNHEKIEVQEDSPVYQDEAEENLADTLDNIVEATGSEGSLLNKAEENAKESEREPAVESETDLKTGKPESSEEVINKEKDVSDNPDGLSKEELGRLVASRWTGEDVGKKSAEADTALDNEDQEDTSHGTNIEEDEGYASDTDDDNHKYDEDVNDDEFQEDEHDDLSSSYKSDVETETDFSDVSTTDDPSWLEKIQKSVWNMFQAVNIFQTPVNQSDAARIRKEYDESSTKLSKISSLTQKQKLDFGPAKEFYSFYDRCFESKQNKYIYKVCPYKQATQEEGHSTTRLGRWDKFEDSYKVMVFSNGDKCWNGPDRSLKVKLKCGLTNEITDVDEPSRCEYVALLATPALCQEEKLKELQHKLDLLNSEIPESHDEL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02090 623 Pfam Glucosidase II beta subunit-like 25 174 IPR028146 -
Trre8g02090 623 Coils Coil 595 622 - -
Trre8g02090 623 Gene3D - 499 597 IPR009011 -
Trre8g02090 623 MobiDBLite consensus disorder prediction 411 425 - -
Trre8g02090 623 MobiDBLite consensus disorder prediction 291 338 - -
Trre8g02090 623 SUPERFAMILY Mannose 6-phosphate receptor domain 508 597 IPR009011 -
Trre8g02090 623 MobiDBLite consensus disorder prediction 395 410 - -
Trre8g02090 623 MobiDBLite consensus disorder prediction 353 394 - -
Trre8g02090 623 MobiDBLite consensus disorder prediction 186 435 - -
Trre8g02090 623 MobiDBLite consensus disorder prediction 186 260 - -
Trre8g02090 623 Pfam Glucosidase II beta subunit-like protein 476 617 IPR036607 -
Trre8g02090 623 PANTHER N-LINKED OLIGOSACCHARIDE PROCESSING 11 623 IPR039794 -
Trre8g02090 623 ProSiteProfiles MRH domain profile. 504 599 IPR044865 -
Trre8g02090 623 Coils Coil 152 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02090 Trre-Chr8 16802423 16811901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02090 21 623 Calmodulin-binding Proteins AT5G56360 58.946 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02090 K08288 - gmx:100807083 866.3