Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02088 ATGCTGGGTGGGTTATACGGAGACCTACCTCCACCTTCTTCCGCCGAAGAAGAAAAACCAACCACCAATGTCTGGTCAAGTAGCACCAAAATGGCTCCAGCCACTCTCCGTAAACCTTCTTCTCTTTTCACACCTCCTCACACGCTTCTCAGATCCCAAAACAAACCTAAAATCACCAATTCCAAAACGGTTCTGTCTTCTGCACCACCTATACTTGCTCCGGCACTTGATGAGGTCATTCAACCGGCTCTGGTGGGCGTGCAGTCGACTGTGTTGGAGGAGTATGATCCGGCAAGGCCGAATGACTATGAGGAGTATCGGAGAGAGAAGAAGAGGAAGGCTAGGGAGGTGGAGATGATGAAGGAGCTGGAGAGACGGCGGGAGGAGGAGGAAGAGAGGGAGAGAGAAAGGGAGAGGGAAAGAGAGAAAGAAAGAGAAAGGGAGAGAGATAGGGATCAGGGTGACTCGAGGTTGAATATTTCGGGTGAGGAGGCGTGGAGGAGGCGTGTGGGGATGAGTGGCGGCGGTGGAGGTGGTGGGGCTGTGCCGAGGTCGCCATCGCCTCCGGGAAATGTGGATGGATTTACTATTGGGAAGTCGGAGACGGGTGGGTTAGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCTAAGATGGGATGGAAGGAAGGGCAAGGGCTTGGGAAACAGGAGCAAGGGATTACTACTCCTTTGATGGCGAAGAAAACCGATAGACGAGCTGGGGTAATTGTCAATGCCAGTGACAGTAAGTCTGATAAGAAAGTCAAGAGTGTCAACATCAATGGGGTACCTACCAGAGTGCTGCTACTTAGAAACATGGTGGGGCCTGGCGAGGTAGATGATGAGCTGGAAGACGAGGTAGGATCAGAATGTGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACCGACGAAGCAGTGAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGATACTTTGGGGGTAGAGTAGTTCGTGCCACATTTTATGATGAGGATAAGTTTGGCAAGAATGAGCTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCACCTAG 1149 0.5091 MLGGLYGDLPPPSSAEEEKPTTNVWSSSTKMAPATLRKPSSLFTPPHTLLRSQNKPKITNSKTVLSSAPPILAPALDEVIQPALVGVQSTVLEEYDPARPNDYEEYRREKKRKAREVEMMKELERRREEEEEREREREREREKERERERDRDQGDSRLNISGEEAWRRRVGMSGGGGGGGAVPRSPSPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEDKFGKNELAPMPGEIPGFT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02088 382 PIRSF SPF45 3 378 IPR040052 GO:0045292
Trre8g02088 382 SMART rrm2_1 278 359 IPR003954 GO:0003676
Trre8g02088 382 FunFam Putative splicing factor 45 276 362 - -
Trre8g02088 382 MobiDBLite consensus disorder prediction 16 61 - -
Trre8g02088 382 CDD RRM_UHM_SPF45 275 371 IPR034653 -
Trre8g02088 382 MobiDBLite consensus disorder prediction 1 61 - -
Trre8g02088 382 Pfam G-patch domain 215 254 IPR000467 GO:0003676
Trre8g02088 382 SUPERFAMILY RNA-binding domain, RBD 279 365 IPR035979 GO:0003676
Trre8g02088 382 Gene3D - 273 371 IPR012677 -
Trre8g02088 382 ProSiteProfiles G-patch domain profile. 212 258 IPR000467 GO:0003676
Trre8g02088 382 PANTHER SPLICING FACTOR 45 SPF45 1 373 IPR040052 GO:0045292
Trre8g02088 382 SMART G-patch_5 210 256 IPR000467 GO:0003676
Trre8g02088 382 MobiDBLite consensus disorder prediction 97 164 - -
Trre8g02088 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 363 IPR000504 GO:0003723
Trre8g02088 382 Coils Coil 103 153 - -
Trre8g02088 382 MobiDBLite consensus disorder prediction 93 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02088 Trre-Chr8 16788473 16792107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02088 218 253 C2H2 Transcription Factor Family AT5G26610 61.111 1.44e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02088 K12840 - zju:107418861 512.686