Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02087 ATGTCGTCTTCTGGAAGAGTGAGTAACTGTCAAGTTGAAGTTGAAAATCAAGCCCCGTTACCACCACCTTCTGTTCGTACGACAAATATGCAAACAGATGGAATTAAACCGCTTTCAGGAAAGCCATACTTTCATGTGATTATTTACAAAACACATCTCAGACCCCGTTATGCAGTGGGGCCGTCTAGCAATATATGCTCAACACTTCCTTTTGTAGCAGTTCCGACTATTCTCAACTGTCGTGGTAAGAGCTGGAAAATGATTTATAATGGCCAAAACAGAGGCAAGCTGTTTGATTCCAATGGCTGGGGAAATTTTGTTAAAGATAATAATTTGAAGCTTGGAGACGCATGCGTTTTCGAGCTCATGGAGCACAGTAAAGATAAAATTGTCTTTGAAGTTCAAATTCTTAGAGGTAACTCCCCGTTCGAATTTTCTGGAATTGGTGATAGTGAAGAAGAGCCGATTGTCCTATCCGAATTTCCTGGAACTGGTGAGAGGGATGCACCCTTTGTCATTGACTAG 525 0.4152 MSSSGRVSNCQVEVENQAPLPPPSVRTTNMQTDGIKPLSGKPYFHVIIYKTHLRPRYAVGPSSNICSTLPFVAVPTILNCRGKSWKMIYNGQNRGKLFDSNGWGNFVKDNNLKLGDACVFELMEHSKDKIVFEVQILRGNSPFEFSGIGDSEEEPIVLSEFPGTGERDAPFVID 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02087 174 Gene3D - 27 140 IPR015300 -
Trre8g02087 174 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 140 IPR044837 -
Trre8g02087 174 CDD B3_DNA 76 138 IPR003340 GO:0003677
Trre8g02087 174 Pfam B3 DNA binding domain 77 133 IPR003340 GO:0003677
Trre8g02087 174 SUPERFAMILY DNA-binding pseudobarrel domain 40 139 IPR015300 -
Trre8g02087 174 SMART B3_2 48 140 IPR003340 GO:0003677
Trre8g02087 174 MobiDBLite consensus disorder prediction 1 28 - -
Trre8g02087 174 ProSiteProfiles B3 DNA-binding domain profile. 76 140 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02087 Trre-Chr8 16785242 16787460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02087 77 143 REM Transcription Factor Family AT4G31680 34.328 1.69e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g02087 B3 5.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02087 - - tpra:123884363 302.367