Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02085 ATGGAGTTTTCGGTTGAGGCGGTGGGAAGCATAAACAACTGTTTCGTATCCCTTCCCTTACCGCTAATCCAAACTCTTCAATCCACAGCTCCATCTCCTCTTCCACCAATTCTCGCTCTTCATCTTCGTTCTCCCACTCACCCTCCTCACTCTTGGTTCGTTGCTTGGTCCGGTGCCACTTCTTCTTCCTCTTCAACCATACAAGTTTCTCAACAATTTGCCGAATGCGTTTCTTTACCGATTCATTCTCCAGTTCAAGTTCAAGTTGCTTCTAACGTTCCTCATGCTTCTTCTGTCTCTATTGAGCCACATACTGAAGATGATTGGGAAATTTTGGAACTTAATTCTCAACAAGCTGAGGATCAAATTCTTAATCAGGTTAGGATTGTTCATGAAGGGATGAGGTTTCCTTTACGGTTGAATGGTCACACTGTCATCACATTCCATGTTGCTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGAGGTTGCTCCAAAGACGCGCAAAAGGAATTCGGATTCAGCAGGAGATTCACATGTAGGTTCTAATATTAGAGAGCATACTGCAAAGATGCTGCTCCGTTTACAAGAGCCAAATGATTTATGCCGTACCAGTACTCATATCAAAGGTGTTGAGCTTCATGTAGGCCTTACTTCGGTTGCTGTTGTTCATCCAGAAACAGCCAAGCGCTTCTCATTTGACACGCTTCAGTTGGTTTCCATAGTGCCAAGAGTATCAAAAGAGAATGTTAATAATTCCAGAACTAAATCCAATATTATGAAAGCCAAAGGTGGCGGTTCAGCTGTTAATGAAGTTGAGAATGGTAATACTGACAAGAAGGAACATCGACAAGCAGTTGTGCATCTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCCAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATCTGATATTATTTTGGAAAAAACTATCCGTTCCATTTCTCTTTGTCCTTGTCGATTCAAACTGGTAAGGCAGGAGAATGCTGTTGAGAAAGATGATCTAGATGATTTTCACAGCCACAGGAATCACATTGATGAAAAATTGCACGGGAAAGCCACTTCAGGTGTCTTTTTGGATACCATAAATTGGTCAATGCATAGTGAAGTTGTTGCAGCTCTCACTGATGAATCCAATTACAGAGAAGAGGAAGAGGTCGCAAACCAATCTCAAAATCAAAAGGGATTACAACGTCTTGTACGACTATGGTATATCGCACAGCTTGAGGCAATTACTTCCATTATGGGGATGGAATTTAATTCATTGGTTATCGGTAGTAAAACCTTGCTCCATTTTGAGTTAAGCTGTTACAAGATTGGGAGTGATGAGAAGCTTCAACTGACTTCTTCTGGAAACAGTGGCAAGGCAGCCGAAATGTTATTTTTATTGACCTTTGGTGAAGAAGATCTGCATCATGGAAAACTTAATGCATATGAAGTTTCACTTGGTGGCAGACTCAATAACATCAACGTTGAGGATCTGAAGTTTTTTGAAAGAATGAAATTGGGTGATCCCGTTTCCATTCATTCTTTGGACGAGAGAGCCTCTGCAGACCACATTCGTTCAAATGTACCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCACTTCCTGGACATGTTGTAATATATGGACCTCCAGGCTCTGGGAAAACTATACTAGCAACGAATGTGGCAATATCCCTTGAGAAGCATGAAGACATCTTAGCGCACATAATTTTTGTTTCTTGCTCAAAACTTGCTTTGGAGAAGGTCCCTGTTATTCGTCAAGAACTTGCAAACCATATAACTGAAGCTATAAACCATGCACCTTCTGTTGTCATCTTTGATAATCTTGATAGTATAATTTCTACCCCTGATTCTGAAGGTTCTCAGCCATCGATGTCTGTTGCTGGACTCACAGATTTTCTAGTTGACATCATGGATGAATACGGGGAGAAGAGGCGGAATTCATGTGGATTTGGTCCAATAGCTTTCATAGCTACCATACAGTCCCTAGAGAGTATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATTAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAAAGCTATGTTGAAGCATGTAATACAAAGACGACAGTTGCAATGCGATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATTTTAGTTGACAGAACTGTCCATGCCGCTGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAACACGAGGGTCCTGCTTTACTACGAGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCAGTTGCAATGCGTGACATCACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGATGATGTCGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATCGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCGCAAGCACCATTAAGGTTGCGGTCAAATATTCTTTTATATGGTCCTCCTGGTTGCGGCAAAACTCACATAGTCGGTGCTGCTGCCGCTGCTTCTTCGCTTCGATTCATATCAGTGAAAGGGCCTGAACTGTTAAATAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCAGCTGCAGCACCGTGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGACCGTGTTGTCAATCAATTTTTGACCGAGTTAGACGGAGTTGAAATTTTAGCTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATCTACTGGATGCAGCATTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGCGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACGGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTTCAGTAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTTCAAGCTCTGCTCTCAGATGCACAACTTGCAGCAGTTCATGATATTCTGGACAATATCGATACATCTGGGTCAGAGAAAACACCAGTTATTACTGACGCTCTTCTAAAGCTCACTGCATCTAAGACCAGACCATCTGTTTCTGAGGAAGAGAAAAGACGACTCTACAGTATTTATCACCAGTTTCTGGATTCAAAGAGATCCGTTGCTGCCCAGTCAAGGGATGCGAAAGGCAAGAGGGCAACTCTAGCGTGA 3393 0.4218 MEFSVEAVGSINNCFVSLPLPLIQTLQSTAPSPLPPILALHLRSPTHPPHSWFVAWSGATSSSSSTIQVSQQFAECVSLPIHSPVQVQVASNVPHASSVSIEPHTEDDWEILELNSQQAEDQILNQVRIVHEGMRFPLRLNGHTVITFHVASVFPKNAVVQLMPGTEVEVAPKTRKRNSDSAGDSHVGSNIREHTAKMLLRLQEPNDLCRTSTHIKGVELHVGLTSVAVVHPETAKRFSFDTLQLVSIVPRVSKENVNNSRTKSNIMKAKGGGSAVNEVENGNTDKKEHRQAVVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKASDIILEKTIRSISLCPCRFKLVRQENAVEKDDLDDFHSHRNHIDEKLHGKATSGVFLDTINWSMHSEVVAALTDESNYREEEEVANQSQNQKGLQRLVRLWYIAQLEAITSIMGMEFNSLVIGSKTLLHFELSCYKIGSDEKLQLTSSGNSGKAAEMLFLLTFGEEDLHHGKLNAYEVSLGGRLNNINVEDLKFFERMKLGDPVSIHSLDERASADHIRSNVPFLGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVVIYGPPGSGKTILATNVAISLEKHEDILAHIIFVSCSKLALEKVPVIRQELANHITEAINHAPSVVIFDNLDSIISTPDSEGSQPSMSVAGLTDFLVDIMDEYGEKRRNSCGFGPIAFIATIQSLESIPQSLSSSGRFDFHIKLPAPAASERKAMLKHVIQRRQLQCDDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALLREDFSQAMHDFLPVAMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLASVANMTEGFSGADLQALLSDAQLAAVHDILDNIDTSGSEKTPVITDALLKLTASKTRPSVSEEEKRRLYSIYHQFLDSKRSVAAQSRDAKGKRATLA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02085 1130 SUPERFAMILY Cdc48 domain 2-like 94 172 IPR029067 -
Trre8g02085 1130 SMART AAA_5 873 1009 IPR003593 GO:0016887
Trre8g02085 1130 SMART AAA_5 587 739 IPR003593 GO:0016887
Trre8g02085 1130 MobiDBLite consensus disorder prediction 170 189 - -
Trre8g02085 1130 FunFam Nuclear valosin-containing protein-like 835 1013 - -
Trre8g02085 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 817 IPR027417 -
Trre8g02085 1130 Pfam ATPase family associated with various cellular activities (AAA) 591 736 IPR003959 GO:0005524|GO:0016887
Trre8g02085 1130 Pfam ATPase family associated with various cellular activities (AAA) 877 1004 IPR003959 GO:0005524|GO:0016887
Trre8g02085 1130 ProSitePatterns AAA-protein family signature. 977 995 IPR003960 GO:0005524|GO:0016887
Trre8g02085 1130 FunFam PeRoXisome assembly factor 1008 1087 - -
Trre8g02085 1130 FunFam Peroxisome biogenesis protein 1 544 738 - -
Trre8g02085 1130 SUPERFAMILY ADC-like 10 87 IPR009010 -
Trre8g02085 1130 PANTHER AAA-FAMILY ATPASE 218 1104 - -
Trre8g02085 1130 Gene3D - 1008 1087 - -
Trre8g02085 1130 Gene3D - 739 831 - -
Trre8g02085 1130 Gene3D - 94 174 - -
Trre8g02085 1130 CDD RecA-like_PEX1_r2 848 1005 - -
Trre8g02085 1130 Coils Coil 1129 1130 - -
Trre8g02085 1130 FunFam Peroxisome biogenesis factor 1 94 173 - -
Trre8g02085 1130 Pfam Peroxisome biogenesis factor 1, N-terminal 98 172 IPR015342 GO:0005524|GO:0005777|GO:0007031
Trre8g02085 1130 Gene3D - 554 738 IPR027417 -
Trre8g02085 1130 Pfam AAA+ lid domain 1029 1068 IPR041569 -
Trre8g02085 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1099 IPR027417 -
Trre8g02085 1130 Gene3D - 838 1100 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02085 Trre-Chr8 16767257 16778865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02085 588 794 Calmodulin-binding Proteins AT3G56690 28.846 1.06e-11 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02085 K13338 - gmx:100803882 1837