Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02083 ATGCTTCAGGATTTACCTGAACATCAGAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCCAATGCAAGAGTGAGAGACCCTGTTTATGGTTGTGTAGGGGCAATTTCGTCACTTCAGCAACAAATTGATGTGCTACAAACCCAATTGGCTGTGGCCCAAGCTGAGGCAGTACACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGCCCAACTAGTCCAACCTATAGTGGCTCTCCATCATCCAAGATCAATGAATCACAACCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGATGGGTGTTGTGGTGATCCAATCGGTTACTTCTAA 357 0.4622 MLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQPKHIFDMDMVVDQDGCCGDPIGYF 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02083 118 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
Trre8g02083 118 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
Trre8g02083 118 MobiDBLite consensus disorder prediction 69 93 - -
Trre8g02083 118 Coils Coil 36 56 - -
Trre8g02083 118 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02083 Trre-Chr8 16748678 16754811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02083 1 75 AS2 family AT1G31320 82.667 5.01e-30 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre8g02083 LOB 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02083 - - jre:108980655 157.918