Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02077 ATGGAAAGAGGCGGTTACAGAAACAAAACTGGTGGCCGTGACGGTTATGGTGGTGGCCGTAGTGGTTATGGTGGTGGTGGCCGTAGCGGCAATGGTGGTGGTAGAGGAAGGGGAAGAGAAAGAGAGTTTTATCCTCAACCCCAATCCAGTCCCGGTGGTGGTGGTGGTGGCCGAGGATTTCCTCAACATCCGCCAAACCGCTGGCAACCAAGGCCAAATCCACCATCACCCGTCACCCACCCAAGTTCATCTTCGGTTCCTCCTCCTTTCACTCCGTCCGACAACAGTCAACCCCAAGTCCGTACTCTTCCACGTCAAGAAAATGTGGCTCCTAAATTAAAAGAGCAGAAAGCGGAAACTACCACAATTGGACCTATACACCGGCCTGACAAGGGAGGGACGGTGTCAATTCGAAGCTGCAAACTTCGTGTGAATCATTTTCCGGTTACCTTCAATCCACAAAGCATTATTATGCACTACAATGTGGATGTGAAGGCTACCGTGCCACCGAAAAAGGGTTTGCCTCCAAAGAAGATTTCCAAGTTTGACTTGTCTATGATCAGGGACCAATTGTTTGCTGATCATCCTGAGACACTGCCTTTGTTGAAGACTGCTTATGATGGAGAGAAAAGCATCTTTAGTGCTGTGCGATTGCCCGAAGAAACTTTTACTGTGGAGGTCTCAAAAGGAGAAGATGAAAGAGCTGTTTCTTATACAGTAACTATAACACTGGTGAACAAACTTGAGCTTCGCAAGTTGAGAGATTACCTTAGTGGCACCGTCTATTCCATTCCGAGGGATATTTTACATGGAATGGACTTGGTGGTGAAGGAGAATCCGGCAAGGAGCACAATTGCTTTAGGAAGATATTTCTTTCCCAACAATCCTCCCTTGGTGGGGAGGGATCTTGAACCCGGAGTAATTGCAATTGGAGGGTTTCAACATAGTCTCAAGACCACGGCTCAGGGTTTATCTTTGTGTCTTGACACTTCAGTTTTGTCTTTCCGAAAGAAAATGTCAGTCTTGGATTTCCTCCATGAACGTATTAGGGGTTTTAATTTGGCTGAGTTTTGGAAATATAAGAAAGCTGTCGAGGATGAACTCATTGATTTGAAAGTAAATGTCACTCACAGGAGAACCAAACAGAAATACACCATTACTAGGTTAACACCTAAAGATACACGCCATATCACTTTCCCTATTTTGGACCAAGATGGCCAAAACCCCACCGAAACCACCTCTCTTCTTGCCTACTTTAAAAGTAAATATGGCATCAATGTTGAATACAAAGATATTCCTGCCTTGGATTTTGGGGGAAAAAAGACTAATTTCGTGCCTATGGAGCTATGTGTCTTGGTTGAGGGTCAGAGATTTCCCAAAGAGTATTTGGACAAGAATTCTGCCAAGAACTTGAAAAATATGTGCTTGGCTAGTCCAAGGGAGCGGCAATCTACAATACAAATGATGATGAAGTCTGGTGATGGACCTTGCGGTGGTGGTATTCTTAAGAATTTTGGAATGAATGTCAACACTTCCATGACAAATGTGACCGGACGCGTGATTCGACCTCCAGTATTGAAGTTAAGTGATCCACGTGGAAAGACTACATCTATGAATCTGGTTCCAGAGAAATGCCAATGGAATCTAGTTGGAAAGTCAATGGTAGAAGGAAAACCTGTTGAGTGTTGGGGCATCCTTGATTTTACCAGCAATGGACCTGGTTGGTGCAGATTAAGAGGCGATCAGTTTGTTAATAATCTTATGGATAAGTACCGAAAGTTGGGCATTGTCATGAAGGAACCTGTTTGTTATGAGAATTCTTCAATGCACAAACTTGGGGATTACAATTCACTAAGTGACTTACTTGAAAAAATAAATGATAAGGTTCAAAAAAACTGTCGACAGCGGCTGCAATTTCTTCTTTGTGTGATGGCCAACAGGGATCATGGTTACAAGTCCCTCAAGTGGATTGCTGATACCAAGGTTGGCATAGTGACGCAGTGCTGCTTATCTGGTAGTGCTAATGAAGGGAAAGACCAATATCTCACTAATCTTGCTCTAAAAATCAATGCAAAAATTGGAGGCAGTAACGTGGAGCTCATTAACAGGCTCCCACACTTTGAGGATGATAGTCCTGTTATGTTTATAGGGGCTGATGTCAATCATCCAGCCTCTCGGGACATAGATAGTCCATCAATTGCTGCGGTGGTTGCAACTACTAACTGGCCCGCTGCAAATCGCTATGCAGCACGTGTTTGCTTTCAAGAGCATCGAAAGGAGAAAATTTTGAATTTTGGAGAAGTTTGCCTTGACCTTGTTACACATTATGAGAAATTGAACAAAGTCAGACCCCAAAAAATTGTTATCTTTCGGGACGGTGTTAGTGAGAGTCAATTTGACATGGTTCTTGGTCAAGAGTTGAAAGATTTGAAGACTGTTTTTCAGCGCTCGAATTACTTTCCAACTATCACTCTTATTGTAGCCCAAAAGCGACATCAAACTCGATTGTTTCCTACTGGTCCGAATGAAGGGACTCCTAATGGCAATGTGTTCCCTGGAACAGTTGTGGACACAACGGTCGTACATCCTTTTGAATTTGATTTTTACCTTTGTAGTCACTTTGGAAGCCTAGGTACAAGCAAGCCTACTCACTATCATGTCTTGTGGGATGAGCACAAATTTACTTCTGATGATTTGCAGAAACTCATTTATGATTTGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATATAGAGGAAGGCTATACTATGAAGCAAAGATGTCGGCACAATCTCCAGATTCAACTGTGTCTTCTTCTTCATCATATTTAGCTTCATCCTTTTCTTCCGCCTCCTCAATTTCAAATGATCCATTTTACAAGTTGCATCCTAATACAGAAAACAGAATGTTTTTTGTCTGA 2961 0.4296 MERGGYRNKTGGRDGYGGGRSGYGGGGRSGNGGGRGRGREREFYPQPQSSPGGGGGGRGFPQHPPNRWQPRPNPPSPVTHPSSSSVPPPFTPSDNSQPQVRTLPRQENVAPKLKEQKAETTTIGPIHRPDKGGTVSIRSCKLRVNHFPVTFNPQSIIMHYNVDVKATVPPKKGLPPKKISKFDLSMIRDQLFADHPETLPLLKTAYDGEKSIFSAVRLPEETFTVEVSKGEDERAVSYTVTITLVNKLELRKLRDYLSGTVYSIPRDILHGMDLVVKENPARSTIALGRYFFPNNPPLVGRDLEPGVIAIGGFQHSLKTTAQGLSLCLDTSVLSFRKKMSVLDFLHERIRGFNLAEFWKYKKAVEDELIDLKVNVTHRRTKQKYTITRLTPKDTRHITFPILDQDGQNPTETTSLLAYFKSKYGINVEYKDIPALDFGGKKTNFVPMELCVLVEGQRFPKEYLDKNSAKNLKNMCLASPRERQSTIQMMMKSGDGPCGGGILKNFGMNVNTSMTNVTGRVIRPPVLKLSDPRGKTTSMNLVPEKCQWNLVGKSMVEGKPVECWGILDFTSNGPGWCRLRGDQFVNNLMDKYRKLGIVMKEPVCYENSSMHKLGDYNSLSDLLEKINDKVQKNCRQRLQFLLCVMANRDHGYKSLKWIADTKVGIVTQCCLSGSANEGKDQYLTNLALKINAKIGGSNVELINRLPHFEDDSPVMFIGADVNHPASRDIDSPSIAAVVATTNWPAANRYAARVCFQEHRKEKILNFGEVCLDLVTHYEKLNKVRPQKIVIFRDGVSESQFDMVLGQELKDLKTVFQRSNYFPTITLIVAQKRHQTRLFPTGPNEGTPNGNVFPGTVVDTTVVHPFEFDFYLCSHFGSLGTSKPTHYHVLWDEHKFTSDDLQKLIYDLCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEAKMSAQSPDSTVSSSSSYLASSFSSASSISNDPFYKLHPNTENRMFFV 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02077 986 SMART Piwi_a_2 639 938 IPR003165 GO:0003676
Trre8g02077 986 Pfam N-terminal domain of argonaute 138 275 IPR032474 -
Trre8g02077 986 SMART PAZ_2_a_3 339 477 IPR003100 GO:0005515
Trre8g02077 986 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 138 940 - -
Trre8g02077 986 Gene3D paz domain 334 458 - -
Trre8g02077 986 CDD PAZ_argonaute_like 339 453 - -
Trre8g02077 986 Pfam Piwi domain 641 937 IPR003165 GO:0003676
Trre8g02077 986 SUPERFAMILY PAZ domain 335 491 IPR036085 GO:0005515
Trre8g02077 986 ProSiteProfiles Piwi domain profile. 639 938 IPR003165 GO:0003676
Trre8g02077 986 Pfam PAZ domain 358 466 IPR003100 GO:0005515
Trre8g02077 986 Gene3D - 520 701 - -
Trre8g02077 986 SUPERFAMILY Ribonuclease H-like 623 938 IPR012337 -
Trre8g02077 986 ProSiteProfiles PAZ domain profile. 364 454 IPR003100 GO:0005515
Trre8g02077 986 MobiDBLite consensus disorder prediction 1 132 - -
Trre8g02077 986 Gene3D - 707 986 IPR036397 GO:0003676
Trre8g02077 986 Pfam Argonaute linker 1 domain 287 337 IPR014811 -
Trre8g02077 986 SMART DUF1785_2 285 338 IPR014811 -
Trre8g02077 986 MobiDBLite consensus disorder prediction 65 94 - -
Trre8g02077 986 CDD Piwi_ago-like 501 937 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02077 Trre-Chr8 16697529 16702090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02077 133 941 Eukaryotic Initiation Factors Gene Family AT5G43810 34.382 2.28e-139 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02077 K11593 - gmx:100805250 1315.06