Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02068 ATGGAAGCGAATATCAACAACAATCGAGACCAAATTGTGGACGTTGGATCGGTTGTAGAAGCTGTTTCTGCTGACGCCGGTGATGCACCGCTTTACACCCTCGAATCCCTCTGCATGCGTTGTCATCAAAACGGAACTACAAGGTTTTTGTTTACTATAATTCCTAACTTCAGGAAGATTTTGTTGTCGGCTTTTGAATGTCCTCATTGTGGTGAGAGGAACAATGAAGTGCAGTTTGCTGGTGAAATTCAACCACGCGGTTGTTGTTACTCGCTAGAGATCCCAGCGGGTGAACAGAAGATGCTCAATCGCCAAGTGGTAAAATCAGAATCTGCTACCATTAAGATACCCGAACTCGATTTTGAGATTCCACCGGAGGCACAGCGTGGTATTCTGTCAACGGTAGAAGGGATACTAATGCGAGCTGCTAATGAACTAGAGGCTCTACAAGAGGAACGCAGGAAAGTGGCTCCAGCGACGGCTGATGCAATAGATCAGTTCTTGGTGAAGTTGCGAGCCTGTGCAACATCAGAATCGTCCTTCACGTTTTTTATTGATGATCCTGCTGGAAACAGTTTCATTGAAAATCCGTTTGCACCGTCATCTGATCCGTCACTGACGATTAAGTATTATGAGCGAACTCCTGAGCAACAAGCACTATTGGGGTATACACAGATTGAAGGAACTCGTGATGCAGCACCAGAAGGTGGAGAAGCTGTGGCTTCTGGGAGAACGAGGAGACAACCACATGGGTCAGTTGGGGCAGCAGCCGGTCAGCGAGCCATTGCACAGAGTAATAGTGTAGAAATTGCAGATGCCTTATTACGATATAGTGCACCAGAAGAGGTGATGACTTTCCCATCTACTTGTGGAACTTGTGCCGCCAAGTGTGAAACTCGAATGTTTGTCACCAATATTCCATATTTCCAAGAAGTAATCGTTATGGCATCTACATGTGATTCTTGTGGTTACCGCAACTCTGAGTTGAAACCAGGTGGACGGATTCCTGAAAAGGGGAAAAAGATTACTCTTCATGTGAAAAATATCAAGGACCTGAGCCGGGATGTAATTAAGTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGTTGGGAAGCGGCACTCTGGGAGGACTAGTTACAACTATTGAAGGTTTAATTACACAAATCAGTGAAAGCCTTGAAAAGGTGCATGGGTATAGTTTTGGTGATAGTCTTGAGGAAAACAGAAAAAACAAGTGGCTAGACTTTCAAACAAGGCTAAACAAGCTTCTTAGCTTGGATGAAGCCTGGACTCTAATTCTTGATGATGCATTGGCTAATTCTTTTGTAGCACCTGTAACTGATGATCTCAAAGATGACCATCAATTAATATTTGAGGAGTATGAGAGATCATGGGAGCAAAATGAAGAACTAGGACTTAATGATATGGACACCTCTTCTGCTGATGCTGCATATGAATCAACAAATACTACTAATACTGTGTGA 1494 0.4364 MEANINNNRDQIVDVGSVVEAVSADAGDAPLYTLESLCMRCHQNGTTRFLFTIIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEIPAGEQKMLNRQVVKSESATIKIPELDFEIPPEAQRGILSTVEGILMRAANELEALQEERRKVAPATADAIDQFLVKLRACATSESSFTFFIDDPAGNSFIENPFAPSSDPSLTIKYYERTPEQQALLGYTQIEGTRDAAPEGGEAVASGRTRRQPHGSVGAAAGQRAIAQSNSVEIADALLRYSAPEEVMTFPSTCGTCAAKCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKKITLHVKNIKDLSRDVIKSDTASVKVPELDLELGSGTLGGLVTTIEGLITQISESLEKVHGYSFGDSLEENRKNKWLDFQTRLNKLLSLDEAWTLILDDALANSFVAPVTDDLKDDHQLIFEEYERSWEQNEELGLNDMDTSSADAAYESTNTTNTV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02068 497 Pfam ZPR1 zinc-finger domain 288 446 IPR004457 GO:0008270
Trre8g02068 497 Pfam ZPR1 zinc-finger domain 36 195 IPR004457 GO:0008270
Trre8g02068 497 FunFam Zinc finger protein ZPR1 26 81 - -
Trre8g02068 497 PANTHER ZINC FINGER PROTEIN ZPR1 16 491 IPR040141 -
Trre8g02068 497 NCBIfam ZPR1 zinc finger domain 289 480 IPR004457 GO:0008270
Trre8g02068 497 NCBIfam ZPR1 zinc finger domain 38 225 IPR004457 GO:0008270
Trre8g02068 497 Gene3D ZPR1, zinc finger domain 278 333 IPR042452 -
Trre8g02068 497 Gene3D ZPR1, zinc finger domain 28 81 IPR042452 -
Trre8g02068 497 SMART zpr1 288 448 IPR004457 GO:0008270
Trre8g02068 497 SMART zpr1 36 196 IPR004457 GO:0008270
Trre8g02068 497 Coils Coil 132 152 - -
Trre8g02068 497 FunFam zinc finger protein ZPR1 82 223 - -
Trre8g02068 497 FunFam Zinc finger protein ZPR1 334 476 - -
Trre8g02068 497 Gene3D ZPR1, A/B domain 334 476 IPR042451 -
Trre8g02068 497 Gene3D ZPR1, A/B domain 82 223 IPR042451 -
Trre8g02068 497 FunFam Zinc finger protein ZPR1 279 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02068 Trre-Chr8 16568629 16581053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02068 5 494 C2H2 Transcription Factor Family AT5G22480 75.560 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02068 K06874 - gmx:100814878 836.254