Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02056 ATGGGAAAGGAGGGTAAGATCGGTGTAGTTGTTGGTGCGGTGATATATGACATTAGAGTTTATGAAGTACCTGCAATGAAGGTAGCTGCTCTAAGGTTCACAGAAACTGCCAGAGCTAGAATTGAGAAGGCTGGGGGAATGTCTCACCTTACCTTTGATCAGCTGGCTCTTAGAGCTCCTTTAGGCCAGAACACGGTATGTATTTTAATGCTACTATTGTCTGCTTATTGCAATTCTAGGTGTTATGGTTTTGTCGAAATTGCAGTACTTTTATTAGTTGGGTTATTTACTTAA 294 0.4082 MGKEGKIGVVVGAVIYDIRVYEVPAMKVAALRFTETARARIEKAGGMSHLTFDQLALRAPLGQNTVCILMLLLSAYCNSRCYGFVEIAVLLLVGLFT 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02056 97 Gene3D - 1 80 - -
Trre8g02056 97 PANTHER 60S RIBOSOMAL PROTEIN L18 2 68 IPR000039 GO:0003735|GO:0005840|GO:0006412
Trre8g02056 97 Pfam Ribosomal protein 60S L18 and 50S L18e 3 67 IPR021131 -
Trre8g02056 97 SUPERFAMILY Ribosomal proteins L15p and L18e 3 67 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02056 Trre-Chr8 16447429 16448036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02056 2 80 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 69.620 6.07e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02056 K02883 - csin:114321737 107.842