Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02055 ATGGAAACATGGGATATCACTTTCTCTTTACCGGAGAAGCTTGCTTTGGCCTGGACCAAGTTGTTTGCTAGTACGATTTCATTGAACTCCAGCACATATAATCTTATGCTATTTCTGATTTATCTATGTTTGTCCTTGAATAATGGATTTGTATTTGAAGTGATTCGGTTGTTTGATTTGTATTTTCAGCTTTACCATTTCCTCGTTTGGAGGACTGATAGTGGTTTCAATAAGGTTATCCTCAAGTGTCTTTTCATGAGCAAAGTTAACAAGCCACCACTTTCACTCTCTAGGTTGTTTTGTTTCATGATGGGAAAGGAGGGTAAGATCGGTGTAGTTGTTGGTGCGGTGATATATGACATTAGAGTTTATGAAGTACCTGCAATGAAGGTAGCTGCTCTAAGGTTCACAGAAACTGCCAGAGCTAGAATTGAGAAGGCTGGGGGAATGTCTCACCTTACCTTTGATCAGCTGGCTCTTAGAGCTCCTTTAGGCCAGAACACGGTATGTATTTTAATGCTACTATTGTCTGCTTATTGCAATTCTAGGTGTTATGGTTTTGTCGAAATTGCAGTACTTTTATTAGTTGGGTTATTTACTTAA 603 0.3881 METWDITFSLPEKLALAWTKLFASTISLNSSTYNLMLFLIYLCLSLNNGFVFEVIRLFDLYFQLYHFLVWRTDSGFNKVILKCLFMSKVNKPPLSLSRLFCFMMGKEGKIGVVVGAVIYDIRVYEVPAMKVAALRFTETARARIEKAGGMSHLTFDQLALRAPLGQNTVCILMLLLSAYCNSRCYGFVEIAVLLLVGLFT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02055 200 SUPERFAMILY Ribosomal proteins L15p and L18e 62 170 IPR036227 -
Trre8g02055 200 PANTHER 60S RIBOSOMAL PROTEIN L18 60 171 IPR000039 GO:0003735|GO:0005840|GO:0006412
Trre8g02055 200 Pfam Ribosomal protein 60S L18 and 50S L18e 59 170 IPR021131 -
Trre8g02055 200 Gene3D - 56 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02055 Trre-Chr8 16447429 16448345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02055 86 183 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 71.429 2.14e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02055 K02883 - pvy:116110370 164.851