Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02024 ATGTCTGATTCATTCTGTAGCTTTCTCTCTGTTACTCCAAATTCCAACCATAATTCCCATGCACCTCCAAAACTCACTACTATCTCCTCAATTCTTCAACCTTTTTCTATTTGCACCCATTGCAACCATTTTCTCCCCTTCAATCACCATGTTGCTCATGTAGCAGAGCAAGGTACCAGCAATAATAATAATATGCAGCCACAAGCAAGCTCAAGATGGAGTCCAACACCAGTACAATTACTAGTACTTGAAGAATTGTATAGGCAAGGGATGAAAACACCATCCGCTGAACAAATCCAACAAATAGCTTCACAGCTTCGACAATTCGGGAAGATCGAAGGGAAAAATGTGTTCTATTGGTTCCAAAATCACAAAGCGAGAGAGCGACAGAAGCGTCGTCGCAGGGAGATGGAGGGAACTACTGGTTCTTCAACTGAAGTTAAAATTGAGAAAGAGAAGTACATTACTGAAAATTCAGAAAAGCAAGAAAATGCAGGATTGAAAGAGACAGGTAATGGAGTTAAAGAGACAAAGAAGTGGGCAACCACTTCAAACTTCAGTGAACAAGCAGAGGATATAGCAGAAAAGGGACCAATACAAGTTTTGAGGAAAAACATAGGTGCAGAAAGGCAAGGAAAGTGCCAAAATATTGAAATTCCTTATTACTTGACTCCTTTTACTAAAAATTCTTCATTAGCAGCAGCATACAGAACATGTAGTAATAATAGCACACCTCATCCAAATTATGAAAAACAAAATGCAGATTATCCTAAGACACTGGATCTTTTTCCAATTAAGGAGGATGAACAAGATGGAAGTTGTCTCATTGAGAGAAAATCTATGGACACTCATGAAATCACATCTTCCAATCAGTTTTTTGAGTTTCTTCCTTTAAGAAATTGA 903 0.3821 MSDSFCSFLSVTPNSNHNSHAPPKLTTISSILQPFSICTHCNHFLPFNHHVAHVAEQGTSNNNNMQPQASSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEGTTGSSTEVKIEKEKYITENSEKQENAGLKETGNGVKETKKWATTSNFSEQAEDIAEKGPIQVLRKNIGAERQGKCQNIEIPYYLTPFTKNSSLAAAYRTCSNNSTPHPNYEKQNADYPKTLDLFPIKEDEQDGSCLIERKSMDTHEITSSNQFFEFLPLRN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02024 300 FunFam WUSCHEL-related homeobox 4 70 137 - -
Trre8g02024 300 Pfam Homeodomain 70 130 IPR001356 GO:0003677
Trre8g02024 300 ProSiteProfiles 'Homeobox' domain profile. 66 131 IPR001356 GO:0003677
Trre8g02024 300 SUPERFAMILY Homeodomain-like 62 133 IPR009057 -
Trre8g02024 300 CDD homeodomain 72 126 IPR001356 GO:0003677
Trre8g02024 300 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 56 289 IPR044555 GO:0003700|GO:0099402
Trre8g02024 300 Gene3D - 54 143 - -
Trre8g02024 300 SMART HOX_1 68 135 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02024 Trre-Chr8 16195968 16198592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02024 64 223 Wox Gene Family AT3G18010 46.061 3.49e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre8g02024 Homeodomain 3.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02024 - - tpra:123904689 421.394