Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02018 ATGGATCCTAATTCTTGCAACATGCATTCACATTGTATACACATGGAAATTCATCAAGTTGTTCCACCACCCCACAAAAGCACTTTACACAAACTCAAAGTTAGGCTCAAGGAAACTTTTTTCCCTGATGATCCTCTACGCCAATTCAAAGGAAAATCACTTAAAACAAAAATTATTTTAGGAGCTAAATATTTTTTCCCTATTCTTCAATGGGGTTCTAATTATAGCTTCAAACTCTTTAAATCTGACCTTATTTCTGGTCTCACTATTGCTAGCTTAGCCATTCCACAGGGAATTAGTTATGCCAAGCTTGCAAATCTTCCTCCAATAGTAGGATTATATTCTAGTTTTGTTCCTCCACTTATTTATGCTGTTCTTGGAAGTTCAAGGGATCTAGCAGTAGGACCTGTTTCAATTGCATCTCTTGTTTTAGGATCCATGCTTAGACAAGAAGTATCTCCTTCAGCAGAACCTGTTCTGTTTCTACAACTTGCTCTTACTTCAACTTTTTTTGCTGGTTTATTTCAAGCTTCACTAGGAATTCTAAGATTAGGATTTATCATTGATTTTTTATCAAAGGCAATCCTAATTGGATTCATGGCTGGTGCTGCTATAATTGTGTCTTTGCAACAACTTAAGAGCTTACTTGGAATCACACATTTTACTAAAGAAATGGGTCTTGTTCCTGTTATGACTTCTGTTTTTCACAATATACATGAGTGGTCATGGCAAACAATAGTTATGGGAATTTGCTTCTTGGTGCTACTACTAATAGCAAGACACGTTAGTATAAGGAAACCAAAGCTATTCTGGGTCTCTGCTGGAGCACCTCTTATGTGTGTCATCATCTCTACTCTTTTTTGTTTTGCAATCAAGGCTCAAAATCATGGCATCAGTTTAATTGGAAAATTACATGAAGGAATAAATCCTGCTTCATGGAATATGTTGAAATTTCATGGAAGTCACCTTGGTCTAGTCATGAAAACTGGCCTTATCACTGGCATTTTGTCCCTCACTGAAGGTATTGCAGTAGGAAGGACATTTGCAGCTCTGGGAAATTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGATTTATGAATGTGGTTGGCTCCTCCACTTCCTGCTATGTTACAACAGGAGCTTTCTCTCGTTCAGCTGTTAATAATAACGCAGGAGCGAAAACAGCAGCTTCAAATATAGTAATGTCTGTGACAGTAATGGTGACACTTCTTTTTCTTATGCCATTGTTCCAATACACACCTAATGTTGTATTGGGTGCAATCATAGTCACAGCAGTGATTGGCCTCATCGATATCCCTGCTGCTTGTCACATTTGGAAGATAGACAAATTCGACTTCCTCGTCATGTTAACTGCTTTCTTGGGTGTTATTTTTATCTCAGTCCAAGAAGGTCTTGCTGTTGCAGTTGGATTATCAACTTTTAGGATACTCCTGCAAATTACAAGGCCTAAAACAGTAATGATGGGGAACATACCAGGTACAGACATATATAGAAATCTTCATCAATACAAGGAAGCTACAAGAATACCAGGATTTCTTATTTTAAGCATTGAGGCTCCAATCAATTTTGCAAACATCACATATCTTAATGACAGGACATTACGATGGATTGAAGAGGAAGAAGAAGATAACATAAAGGAACACTCAAGTCTTCGATTTTTAATCCTAGATATGTCAGCTGTGAGCGCCATTGACACGAGTGGAATCTCACTTTTCAAGGAGTTAAAGGCAACACTGGAAAAAAAGGGTGTTGAGCTTGTGTTGGTTAATCCTCTTGCCGAGGTCATTGAAAAGCTGAAAAAAGCAGACGAATCTAATACTTTCATACGAGCAGACAACCTTTTCTTGACAGTTGGAGAGGCTGTGGCGTCACTTTCATCAACAATGAAGAGCCAATCAACCACGACAGAAGAAGCACATACAATCGTTCCACATTACTGA 1968 0.3811 MDPNSCNMHSHCIHMEIHQVVPPPHKSTLHKLKVRLKETFFPDDPLRQFKGKSLKTKIILGAKYFFPILQWGSNYSFKLFKSDLISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYAVLGSSRDLAVGPVSIASLVLGSMLRQEVSPSAEPVLFLQLALTSTFFAGLFQASLGILRLGFIIDFLSKAILIGFMAGAAIIVSLQQLKSLLGITHFTKEMGLVPVMTSVFHNIHEWSWQTIVMGICFLVLLLIARHVSIRKPKLFWVSAGAPLMCVIISTLFCFAIKAQNHGISLIGKLHEGINPASWNMLKFHGSHLGLVMKTGLITGILSLTEGIAVGRTFAALGNYKVDGNKEMMAIGFMNVVGSSTSCYVTTGAFSRSAVNNNAGAKTAASNIVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDIPAACHIWKIDKFDFLVMLTAFLGVIFISVQEGLAVAVGLSTFRILLQITRPKTVMMGNIPGTDIYRNLHQYKEATRIPGFLILSIEAPINFANITYLNDRTLRWIEEEEEDNIKEHSSLRFLILDMSAVSAIDTSGISLFKELKATLEKKGVELVLVNPLAEVIEKLKKADESNTFIRADNLFLTVGEAVASLSSTMKSQSTTTEEAHTIVPHY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02018 655 Pfam STAS domain 512 630 IPR002645 -
Trre8g02018 655 Gene3D STAS domain 491 637 IPR036513 -
Trre8g02018 655 NCBIfam sulfate permease 67 630 IPR001902 GO:0016020|GO:0055085
Trre8g02018 655 Pfam Sulfate permease family 80 460 IPR011547 GO:0016020
Trre8g02018 655 ProSiteProfiles STAS domain profile. 511 634 IPR002645 -
Trre8g02018 655 FunFam Sulfate transporter 31 491 637 - -
Trre8g02018 655 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271|GO:0008272
Trre8g02018 655 CDD STAS_SulP_like_sulfate_transporter 512 612 - -
Trre8g02018 655 SUPERFAMILY SpoIIaa-like 516 634 IPR036513 -
Trre8g02018 655 PANTHER SULFATE TRANSPORTER 27 638 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02018 Trre-Chr8 16106155 16111325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02018 15 641 Inorganic Solute Cotransporters AT3G15990 66.614 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02018 K17471 - gmx:100787284 1132.47