Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02017 ATGCGAGAGAAAGGTATAGGTGAAGGCATTACTTTCGATCTTGAAATCGAGTGGACTGTACTAGCAAAACTACGAGCTAAGAGGTTAGCTCAAGCATCAGCCTTAGAAGTCAAAGATACTCTTACTGACGAGAGTATAGAGGATCAAAATAATCCACCTCCGCCACCTAGGCGAACTATGGAAGACTATTGCAGAAGGACTGATAATGAGCAGCTCAGTTCAGTTCAGTTTTGCTGTGTGTCCTCCGTCTGCTGCTCCCACGCAACAACCTTTCTGATTGAAATGGAAATCAGTAGCGGCAATAACAGCAGTAACATGATGTGGTTTTTCAAAGATAGAGGTTTTGATGATACTATCATAAAAGCAATGTTCAAAAAATGTAAGCGTCTCGAGACGGCGCATCGCGAAAGAGCAGATGAGAATTGGGAGTATTTGAAAACCATTGGAATTTTAGAAAGGAAACTTCCTTCAATTGTTTCAAAATGTCCTAAGATTCTTGTACTTGGTCTTAATGAGAAAATTCTCCCTATGGTTGAATGTCTCAACACACTTGCAACAAAACCTAATGAAGTTGCATCTGCCATAGCTAAGTTCCCTCACATTCTCTCTTATAGCGTCGAAGAGAAGCTTTGTCCTCTTTTGGCGTTTTTTCAGGCATTAGGCGTCCCCGAGAAACAAATCGGGAAAATTTTACTGTTAAACCCTAGGCTTATTAGTTACAGTATTGAGACAAAGATGGGGGAAATTGTGAAATTTCTTTCCAGCATTGGTCTTGATAAAGACGGAATGATTGGAAAAATTATGGTCAAGGATCCGTTTATTATGGGTTATAGTGTTGATAAAAGGCTTCGCCCTACTTCGGAGTTTCTGAAGTCAATTGGTTTGAATGAGCAGGATCTTCAAGTTATAGCCTTGAATTTCCCGTCGATTTTGAGTAGAGACGTGAACAAGGTTTTGGTACACAATTACGATTATTTAAAGAGCCGTGGATTTCAAGGGCGACAGATAGTTGATTTGGTAGTTGGTTTTCCTCCTGTTTTGATCAAGAGCATTCGGAATTCTTTAGAACCAAGGATCAAGTTTTTAGTCGATGTAATGGGGAGAGAAGTCGATGAAATCATTGATTATCCATGCTTCTTTCGTCATGGCTTGAAGAAAAAATTAGTGTCGCGGCACAAACTCCTACAGAAGAGGAATTTAAATTGCAGCTTGAGTGAAATGCTTGATTGTAATGAGAAGAAGTTCCACTTGAAGTTTGGCTTGTTAGAAGGACATGCCTTGAGTAACTAG 1290 0.3984 MREKGIGEGITFDLEIEWTVLAKLRAKRLAQASALEVKDTLTDESIEDQNNPPPPPRRTMEDYCRRTDNEQLSSVQFCCVSSVCCSHATTFLIEMEISSGNNSSNMMWFFKDRGFDDTIIKAMFKKCKRLETAHRERADENWEYLKTIGILERKLPSIVSKCPKILVLGLNEKILPMVECLNTLATKPNEVASAIAKFPHILSYSVEEKLCPLLAFFQALGVPEKQIGKILLLNPRLISYSIETKMGEIVKFLSSIGLDKDGMIGKIMVKDPFIMGYSVDKRLRPTSEFLKSIGLNEQDLQVIALNFPSILSRDVNKVLVHNYDYLKSRGFQGRQIVDLVVGFPPVLIKSIRNSLEPRIKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLQKRNLNCSLSEMLDCNEKKFHLKFGLLEGHALSN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02017 429 PANTHER CGI-12 PROTEIN-RELATED 226 347 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 191 423 - -
Trre8g02017 429 Gene3D Transcription termination factor 3, mitochondrial 188 423 IPR038538 -
Trre8g02017 429 SMART mt_12 121 151 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 SMART mt_12 301 332 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 SMART mt_12 370 401 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 SMART mt_12 337 369 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 SMART mt_12 156 187 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 SMART mt_12 192 223 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 MobiDBLite consensus disorder prediction 40 60 - -
Trre8g02017 429 Pfam mTERF 104 217 IPR003690 GO:0003690|GO:0006355
Trre8g02017 429 Pfam mTERF 206 415 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02017 Trre-Chr8 16101128 16104910 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre8g02017 mTERF 2.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02017 K15032 - gmx:100816929 541.962