Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02013 ATGGATGTACATCAAGTTGTTCCACCACCACACATGAGCACTATACAAAGAATCAAAAACAAATTCAAAGAAACATTTTTCCCTGATGATCCTATGCGCCAATTTAAAGGACAACCACTTAATAAAAAGTTCATCCTTGGAGTTCAATATTTTTTCCCTATTCTTCAATGGTTACCTAATTATAGTTTCAAACTCTTTAAATGTGACCTTATTGCTGGCCTCACCATTGCTAGCTTAGCCATCCCACAGGGAATTAGTTATGCTAAGCTTGCAAGTCTTCCTCCAATTATGGGACTTTATTCAAGTTTTGTTCCACCACTACTTTATGTTATTCTTGGAAGTTCAAGGGATCTTGCTGTAGGACCTGTTTCAATTGCCTCTCTTGTTTTGGGATCTATGCTTGCAGAGGAAGTATCTCCCAAAACACAACTTGGTCTTTTTATTCAGTTAGCTTTTACTTCAACTTTTTTTGCTGGTATTTTTCAAGCTGCTCTTGGAATTCTAAGGCTAGGATTTATTATTGATTTTCTATCTAAGGCGATTCTGATTGGGTTTATGGCTGGAGCTGCTATTATTGTGTCTCTACAACAGCTAAAGAGTTTACTTGGAATCACACATTTTACTAAAGAGATGAGCATTATTCCTGTCATGCGTTCTGTTTTTGACCATATCGATGAGTGGTCATGGGAAACAATAGTGATGGGGGTTTTCTTCTTGATGATACTTTTGCTTGCAAGACACATTACAATAAGGAAGCCGGAACTATTCTGGGTATCGGCCGGAGCTCCTCTTGCTTGTGTTATCATTTCTACCATCCTTAGTTTTGTAATCAAGGGTGAACATCATGGCATCAGTATAGTTGGGAAATTGGAACAAGGAATAAATCCAGTTTCAACCAAGATGTTGCTTTTTCACGGAAATTATCTTGGTCTAACCATCAAAACCGGGATCATCACTGGAATTTTATCGCTCACCGAAGGAATTGCAGTTGGGAGAACATTTGCAGCTTTCAGAAATTACAAAGTTGATGGAAATAAAGAAATGATAGCAATTGGTTTCATGAATGTGGTTGGCTCTACTACATCTTGCTATGTCACAACAGGATCATTTTCTCGGTCGGCTGTGAATCATAACGCGGGTGCAAGAACAGCAATGTCAAACGTAGTAATGTCCTTGACAGTCATGGTGACACTCCTGTTTCTTATGCCATTGTTTCGGTACACGCCTAATGTTGTATTGGGTGCAATCATAATAACAGCAGTAATTGGCCTCATTGATATTTCTGCTGCTTATCTCATTTGGAAGATCGATAAATGCGATTTCATTGTGTTGTTGACTGCTTTCTTTGGTGTTATCTTCCTCTCTGTCCAGTACGGTCTCGCTCTTGCAGTCGGATTGTCAATTTTTAGGATCATACTGCAAATTACAAGGCCTAAGACAGTGATGTTGGGGAACATACCGGAGACAAACATATATAGAGATCTTCACCATTATAAAGAAGCTATAAGAGTACCTGGTTTTCTTATTCTAAGTATAGAAGCACCAATCAATTTTGCTAACATCACATATCTTCATGAGAGGATATTGCGATGGATAGAAGAAGAGGAGGATACCAGAACAGAAAACTCCGGCCTTCGATATGTTATTTTAGAAATGTCAGCTGTGAATTCCATAGACACAAGTGGAGTCTCACTTTTCAAGGAGTTAAAAGTAGCATTAAAAATGAAGGGTGTTGAGCTTGTATTGGTGAATCCTCTAGCTGAGGTTATTGCAAAGCTGAAAAAAGCAGATGAAGCTAATGATTTTATAAGAGCAGATTACCTTTTCTTGACAGTTGGAGAGGCTGTAGCTGCACTTTTATCAGCAATGAAAAGCCAATCACCAAGCATGGATGAAGAGTTACATACAATTGTGACTGAATGTTGA 1926 0.3842 MDVHQVVPPPHMSTIQRIKNKFKETFFPDDPMRQFKGQPLNKKFILGVQYFFPILQWLPNYSFKLFKCDLIAGLTIASLAIPQGISYAKLASLPPIMGLYSSFVPPLLYVILGSSRDLAVGPVSIASLVLGSMLAEEVSPKTQLGLFIQLAFTSTFFAGIFQAALGILRLGFIIDFLSKAILIGFMAGAAIIVSLQQLKSLLGITHFTKEMSIIPVMRSVFDHIDEWSWETIVMGVFFLMILLLARHITIRKPELFWVSAGAPLACVIISTILSFVIKGEHHGISIVGKLEQGINPVSTKMLLFHGNYLGLTIKTGIITGILSLTEGIAVGRTFAAFRNYKVDGNKEMIAIGFMNVVGSTTSCYVTTGSFSRSAVNHNAGARTAMSNVVMSLTVMVTLLFLMPLFRYTPNVVLGAIIITAVIGLIDISAAYLIWKIDKCDFIVLLTAFFGVIFLSVQYGLALAVGLSIFRIILQITRPKTVMLGNIPETNIYRDLHHYKEAIRVPGFLILSIEAPINFANITYLHERILRWIEEEEDTRTENSGLRYVILEMSAVNSIDTSGVSLFKELKVALKMKGVELVLVNPLAEVIAKLKKADEANDFIRADYLFLTVGEAVAALLSAMKSQSPSMDEELHTIVTEC 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02013 641 Pfam Sulfate permease family 66 445 IPR011547 GO:0016020
Trre8g02013 641 SUPERFAMILY SpoIIaa-like 503 619 IPR036513 -
Trre8g02013 641 PANTHER SULFATE TRANSPORTER 15 621 IPR001902 GO:0016020|GO:0055085
Trre8g02013 641 Gene3D STAS domain 477 621 IPR036513 -
Trre8g02013 641 ProSiteProfiles STAS domain profile. 497 619 IPR002645 -
Trre8g02013 641 CDD STAS_SulP_like_sulfate_transporter 498 612 - -
Trre8g02013 641 Pfam STAS domain 498 615 IPR002645 -
Trre8g02013 641 NCBIfam sulfate permease 53 615 IPR001902 GO:0016020|GO:0055085
Trre8g02013 641 FunFam Sulfate transporter 31 477 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02013 Trre-Chr8 16085381 16091490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02013 1 626 Inorganic Solute Cotransporters AT3G15990 62.739 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02013 K17471 - gmx:100819130 967.222