Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02009 ATGGATGATGAAGTTGTTCAGCGAGTTTTCCATGAAGGTGGACGCGATTACTTCCAACAACAACCTTCAACTTCTTCCTCATCGATTCTTCAATCTCTCCCTCTCCACGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATCCAAGAACTACGAGAGAAAAAGGATGGCCTTGTTACAGTTGGCATTGGTGGTCCGAGCGGTTCTGGTAAAACAAGCTTAACAGAAAAGGTGGCATCTGTTTTTGGCTGTACTGTTATATCAATGGAGAATTATTGTGATGGAGTTGATGAAGGGAATGTTCTGGATTCTATAGATTTTGATACCTTGATCAAGAATCTTGAGGATTTGACAAAAGGCAATGATACATTAGTTCCAGAGTTTGATTATCAGCAAAAGAGACGGGTTGGCTATAAAAAAATAATGAGTGCTTCATTTGGGGTGGTAATAGTTGATGGTACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCAGTGGTTGGCGGTGTTCATTTTAGCCTACTTTCTAAAGTTCGGTATGACATTGGAGATTCTTGTTCACTGGATTACCTAATAGATAGCATTTTTCCATTATTTAGGAAGCACATCGAGTCAGATCTTCATCATGCACAGATCAGAATTAACAACAGCTTTGTGTCATCGTTTAGAGAGGCAATCTACAAGGTCAAATGCAGAAGCAAGTCTTCAGATGAACATCCAGGTTCTTCCTTGCAAGGAAATCAAGCTCAAACAGATAATTTTATTGAAATGTACCTTAGACCACCTTCGGCTAGTGAAGAAGCAGGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGGTACTATTTATCCCTTGGTGACCAGAGGATTGTCGACAAAAATTTCATCATCCGGCCGAAAGCTGAGTTTGAGGTTGGACGAATGACGTTGGGCGGGTTGCTGGCTCTTGGGTACATTGTTGTGGTTAGTTATAAACGCGCATCCACAACTGTCAATTATGGCAAGGTTTCAATGTCATTTGAAACTATTGATGTTCTTGGTGAGACATTCATGGTCATGAGAGGAACCGATAGGAAGACTGTTGGAACAGAAGCATTGAGGATGGGTATCAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCCCGGCTTAGTACACCACCACTTGTGTCTAATACAACTGTGGCTGGCAGTCAAGAAACAGTAATAGTTGCACCAAAGCCAATTCGTGTTACTGCCAATGTTGTTACTGGACTTGAGGATTTATCTCAGCCATGGACTCGATCCCCAACTAAATCAAAAACAGAACCTTTTGTGGCTACCTGGCATTTCACGTCTTCAGATTCCTCCCATCATGACAACACAGTCCTAGCAACCACAGACCCCTCTTCTTTCAGGGACACTGTTAAGCTTGCTCCAATGCCTGATTCATATGACCTGGATAGGGGACTGCTTTTGGCAGTTCAAGCCATACAAGCTTTGTTGGAGAATAAAGGTGCCCCAGTCATTGTTGGAATTGGTGGTCCAAGTGGGTGTGGGAAGACAAGTTTGGCTCATAAAATGGCAAACATAATTGGTTGTGAAATAGTTTCCCTAGAAAGTTATTACAAAGAAGTTAAGGATTTTAAATATGATGACTTCAGCTCACTTGATTTATCTTTGCTATCAAAGAATATTGATGATATAAGAAATGGCCGAAGAACCAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGTGTCTATGCTTTGCATCCCGATATCCGAATATCACTTGATTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTAATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGGTGTTTTATTTCCCAAAATGAGATCATGATGACAGTGTTTCCAATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAACGACTTTGACCCTGTGCTTTCTCCCGAGAGTTCACTGTTTGTATTGAAGAGTAACAAAAAAGTAGGTTATCAAGATATTCTAGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAGTTTATTGATATTTATATGAGACTTCCTGGGATCCCTTCTAATGGTCAACTGACAGATAGTGATTGTATTCGGGTCAGAATATGTGAAGGCAGATTTGCATTACTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTACTACGGTTGCTGGTCTTCTTAACCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTGCAAGATGTCCCTGGTCAATACATTCAGATAAAGGGTGTTTCTAAAGATGCTGTGGCAGCAGCTGGTTCAATGCTTAAATTGGATGGTTCGTATACTACTAAGAGTTACCTTGAAATAGTTTTGGAAAGACTACCAACAATAGAGAGAAGTTCTGGTGGGATTAACTTTCAGCAATCAACAAGGCTGCTAGAGATTGTGGACTTTATTCAATCTCAGGGATGTAGCTCTTCTTCAGAATCCTCGTCAAGTAGGGTAGTCTCTCCAATTGAAGGCATTATTGAGGAGATGCAATCAAAGATTAGAAGGCTTGAAAAATGGCTTGCTATAAATACGGTTCTCTGGACATTTCTAATGTCAGCAATTGTTGGTTATTCACTTTATCAAAGGAGGCGTCAATGA 2862 0.4004 MDDEVVQRVFHEGGRDYFQQQPSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVASVFGCTVISMENYCDGVDEGNVLDSIDFDTLIKNLEDLTKGNDTLVPEFDYQQKRRVGYKKIMSASFGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIESDLHHAQIRINNSFVSSFREAIYKVKCRSKSSDEHPGSSLQGNQAQTDNFIEMYLRPPSASEEAGINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNYGKVSMSFETIDVLGETFMVMRGTDRKTVGTEALRMGINGPWITKSYLEMILERKGVPRLSTPPLVSNTTVAGSQETVIVAPKPIRVTANVVTGLEDLSQPWTRSPTKSKTEPFVATWHFTSSDSSHHDNTVLATTDPSSFRDTVKLAPMPDSYDLDRGLLLAVQAIQALLENKGAPVIVGIGGPSGCGKTSLAHKMANIIGCEIVSLESYYKEVKDFKYDDFSSLDLSLLSKNIDDIRNGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVGYQDILAILDPAKFCSSVQKFIDIYMRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISITTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGQYIQIKGVSKDAVAAAGSMLKLDGSYTTKSYLEIVLERLPTIERSSGGINFQQSTRLLEIVDFIQSQGCSSSSESSSSRVVSPIEGIIEEMQSKIRRLEKWLAINTVLWTFLMSAIVGYSLYQRRRQ 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02009 953 Gene3D - 61 242 IPR027417 -
Trre8g02009 953 CDD UMPK_like 62 224 - -
Trre8g02009 953 PANTHER URIDINE KINASE 488 876 - -
Trre8g02009 953 SUPERFAMILY CYTH-like phosphatases 726 860 IPR033469 -
Trre8g02009 953 Gene3D - 705 865 - -
Trre8g02009 953 Gene3D - 517 694 IPR027417 -
Trre8g02009 953 Pfam Phosphoribulokinase / Uridine kinase family 520 685 IPR006083 GO:0005524|GO:0016301
Trre8g02009 953 Pfam Phosphoribulokinase / Uridine kinase family 106 202 IPR006083 GO:0005524|GO:0016301
Trre8g02009 953 CDD UMPK_like 520 688 - -
Trre8g02009 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 688 IPR027417 -
Trre8g02009 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 172 IPR027417 -
Trre8g02009 953 SMART AAA_5 517 661 IPR003593 GO:0016887
Trre8g02009 953 SMART AAA_5 59 209 IPR003593 GO:0016887
Trre8g02009 953 PRINTS Uridine kinase signature 518 535 - -
Trre8g02009 953 PRINTS Uridine kinase signature 545 556 - -
Trre8g02009 953 PRINTS Uridine kinase signature 639 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02009 Trre-Chr8 16059316 16074145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02009 513 716 PRT Gene Family AT1G55810 24.312 2.60e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02009 - - gmx:100778905 1687.16