Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02008 ATGGATGATGAAGTTGTTCAGCGAGTTTTCCATGAAGGTGGACGCGATTACTTCCAACAACAACCTTCAACTTCTTCCTCATCGATTCTTCAATCTCTCCCTCTCCACGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATCCAAGAACTACGAGAGAAAAAGGATGGCCTTGTTACAGTTGGCATTGGTGGTCCGAGCGGTTCTGGTAAAACAAGCTTAACAGAAAAGGTGGCATCTGTTTTTGGCTGTACTGTTATATCAATGGAGAATTATTGTGATGGAGTTGATGAAGGGAATGTTCTGGATTCTATAGATTTTGATACCTTGATCAAGAATCTTGAGGATTTGACAAAAGGCAATGATACATTAGTTCCAGAGTTTGATTATCAGCAAAAGAGACGGGTTGGCTATAAAAAAATAATGAGTGCTTCATTTGGGGTGGTAATAGTTGATGGTACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCAGTGGTTGGCGGTGTTCATTTTAGCCTACTTTCTAAAGTTCGGTATGACATTGGAGATTCTTGTTCACTGGATTACCTAATAGATAGCATTTTTCCATTATTTAGGAAGCACATCGAGTCAGATCTTCATCATGCACAGATCAGAATTAACAACAGCTTTGTGTCATCGTTTAGAGAGGCAATCTACAAGGTCAAATGCAGAAGCAAGTCTTCAGATGAACATCCAGGTTCTTCCTTGCAAGGAAATCAAGCTCAAACAGATAATTTTATTGAAATGTACCTTAGACCACCTTCGGCTAGTGAAGAAGCAGGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGGTACTATTTATCCCTTGGTGACCAGAGGATTGTCGACAAAAATTTCATCATCCGGCCGAAAGCTGAGTTTGAGGTTGGACGAATGACGTTGGGCGGGTTGCTGGCTCTTGGGTACATTGTTGTGGTTAGTTATAAACGCGCATCCACAACTGTCAATTATGGCAAGGTTTCAATGTCATTTGAAACTATTGATGTTCTTGGTGAGACATTCATGGTCATGAGAGGAACCGATAGGAAGACTGTTGGAACAGAAGCATTGAGGATGGGTATCAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCCCGGCTTAGTACACCACCACTTGTGTCTAATACAACTGTGGCTGGCAGTCAAGAAACAGTAATAGTTGCACCAAAGCCAATTCGTGTTACTGCCAATGTTGTTACTGGACTTGAGGATTTATCTCAGCCATGGACTCGATCCCCAACTAAATCAAAAACAGAACCTTTTGTGGCTACCTGGCATTTCACGTCTTCAGATTCCTCCCATCATGACAACACAGTCCTAGACTTCTCTCATGAAGCAACCACAGACCCCTCTTCTTTCAGGGACACTGTTAAGCTTGCTCCAATGCCTGATTCATATGACCTGGATAGGGGACTGCTTTTGGCAGTTCAAGCCATACAAGCTTTGTTGGAGAATAAAGGTGCCCCAGTCATTGTTGGAATTGGTGGTCCAAGTGGGTGTGGGAAGACAAGTTTGGCTCATAAAATGGCAAACATAATTGGTTGTGAAATAGTTTCCCTAGAAAGTTATTACAAAGAAGTTAAGGATTTTAAATATGATGACTTCAGCTCACTTGATTTATCTTTGCTATCAAAGAATATTGATGATATAAGAAATGGCCGAAGAACCAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGTGTCTATGCTTTGCATCCCGATATCCGAATATCACTTGATTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTAATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGGTGTTTTATTTCCCAAAATGAGATCATGATGACAGTGTTTCCAATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAACGACTTTGACCCTGTGCTTTCTCCCGAGAGTTCACTGTTTGTATTGAAGAGTAACAAAAAAGTAGGTTATCAAGATATTCTAGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAGTTTATTGATATTTATATGAGACTTCCTGGGATCCCTTCTAATGGTCAACTGACAGATAGTGATTGTATTCGGGTCAGAATATGTGAAGGCAGATTTGCATTACTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTACTACGGTTGCTGGTCTTCTTAACCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTGCAAGATGTCCCTGGTCAATACATTCAGATAAAGGGTGTTTCTAAAGATGCTGTGGCAGCAGCTGGTTCAATGCTTAAATTGGATGGTTCGTATACTACTAAGAGTTACCTTGAAATAGTTTTGGAAAGACTACCAACAATAGAGAGAAGTTCTGGTGGGATTAACTTTCAGCAATCAACAAGGCTGCTAGAGATTGTGGACTTTATTCAATCTCAGGGATGTAGCTCTTCTTCAGAATCCTCGTCAAGTAGGGTAGTCTCTCCAATTGAAGGCATTATTGAGGAGATGCAATCAAAGATTAGAAGGCTTGAAAAATGGCTTGCTATAAATACGGTTCTCTGGACATTTCTAATGTCAGCAATTGTTGGTTATTCACTTTATCAAAGGAGGCGTCAATGA 2877 0.4004 MDDEVVQRVFHEGGRDYFQQQPSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVASVFGCTVISMENYCDGVDEGNVLDSIDFDTLIKNLEDLTKGNDTLVPEFDYQQKRRVGYKKIMSASFGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIESDLHHAQIRINNSFVSSFREAIYKVKCRSKSSDEHPGSSLQGNQAQTDNFIEMYLRPPSASEEAGINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNYGKVSMSFETIDVLGETFMVMRGTDRKTVGTEALRMGINGPWITKSYLEMILERKGVPRLSTPPLVSNTTVAGSQETVIVAPKPIRVTANVVTGLEDLSQPWTRSPTKSKTEPFVATWHFTSSDSSHHDNTVLDFSHEATTDPSSFRDTVKLAPMPDSYDLDRGLLLAVQAIQALLENKGAPVIVGIGGPSGCGKTSLAHKMANIIGCEIVSLESYYKEVKDFKYDDFSSLDLSLLSKNIDDIRNGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVGYQDILAILDPAKFCSSVQKFIDIYMRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISITTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGQYIQIKGVSKDAVAAAGSMLKLDGSYTTKSYLEIVLERLPTIERSSGGINFQQSTRLLEIVDFIQSQGCSSSSESSSSRVVSPIEGIIEEMQSKIRRLEKWLAINTVLWTFLMSAIVGYSLYQRRRQ 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02008 958 PANTHER URIDINE KINASE 491 881 - -
Trre8g02008 958 CDD UMPK_like 62 224 - -
Trre8g02008 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 693 IPR027417 -
Trre8g02008 958 SMART AAA_5 59 209 IPR003593 GO:0016887
Trre8g02008 958 SMART AAA_5 522 666 IPR003593 GO:0016887
Trre8g02008 958 CDD UMPK_like 525 693 - -
Trre8g02008 958 PRINTS Uridine kinase signature 550 561 - -
Trre8g02008 958 PRINTS Uridine kinase signature 644 654 - -
Trre8g02008 958 PRINTS Uridine kinase signature 523 540 - -
Trre8g02008 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 172 IPR027417 -
Trre8g02008 958 Gene3D - 522 699 IPR027417 -
Trre8g02008 958 SUPERFAMILY CYTH-like phosphatases 731 865 IPR033469 -
Trre8g02008 958 Pfam Phosphoribulokinase / Uridine kinase family 525 690 IPR006083 GO:0005524|GO:0016301
Trre8g02008 958 Pfam Phosphoribulokinase / Uridine kinase family 106 202 IPR006083 GO:0005524|GO:0016301
Trre8g02008 958 Gene3D - 61 242 IPR027417 -
Trre8g02008 958 Gene3D - 710 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02008 Trre-Chr8 16059316 16074145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02008 518 721 PRT Gene Family AT1G55810 24.312 2.78e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02008 - - gmx:100778905 1704.49