Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02003 ATGGCAATTTTACCTACAAATTCATCCAGCTTGGAATTAACCATATCCATCCCAGGTTTTGCTACTTCTTCACCAACCACTTTTCTCCCCTCATCAACCGTGAACAAATTGGACATGAATCGAGTAGCCATAGAGGAAGAATGGATGGAAGTAGAAGATGAAGAAGACACTCATCCTCGCAAAAAACTTCGTCTCACGAAGGAACAGTCACGTCTTCTTGAAGAAAGATTCAGAACAAATCACACTTTAAACCCAAAGCAGAAAGAGAGTTTGGCAATGCAGCTGAAGCTCCGACCAAGGCAAGTGGAAGTTTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTGAAGCAAACAGAGATGGAATGCGAGTACTTGAAGAGATGGTTTGGGACTCTGACAGAACAGAACCGAAGATTACAAAAAGAAGTTGAAGAACTGAGAGCTATGAAAGTGGGTCCACCAACTGTGTTGTTATCCCCTCACAGCTGCGAGCCACTTCCAGCTTCAACACTATCTATGTGTCCACGATGTGAGCGTGTCACCACCAACACCGCCGACAAATTTCTCACCGACGCCGTCATTTTGTCTCCTAAAGTGTCCACGCCTGCCCTGCATTCGCGTCAAATATGA 630 0.454 MAILPTNSSSLELTISIPGFATSSPTTFLPSSTVNKLDMNRVAIEEEWMEVEDEEDTHPRKKLRLTKEQSRLLEERFRTNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGTLTEQNRRLQKEVEELRAMKVGPPTVLLSPHSCEPLPASTLSMCPRCERVTTNTADKFLTDAVILSPKVSTPALHSRQI 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02003 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 186 - -
Trre8g02003 209 SUPERFAMILY Homeodomain-like 56 117 IPR009057 -
Trre8g02003 209 Coils Coil 129 149 - -
Trre8g02003 209 SMART halz 116 159 IPR003106 GO:0006355|GO:0043565
Trre8g02003 209 SMART HOX_1 58 120 IPR001356 GO:0003677
Trre8g02003 209 Gene3D - 53 123 - -
Trre8g02003 209 Pfam Homeodomain 60 114 IPR001356 GO:0003677
Trre8g02003 209 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Trre8g02003 209 CDD homeodomain 59 117 IPR001356 GO:0003677
Trre8g02003 209 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Trre8g02003 209 Pfam Homeobox associated leucine zipper 116 150 IPR003106 GO:0006355|GO:0043565
Trre8g02003 209 FunFam Homeobox-leucine zipper protein 18 45 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02003 Trre-Chr8 16021747 16027483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02003 53 181 Homeobox Transcription Factor Family AT1G70920 66.917 3.79e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre8g02003 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02003 K09338 - gmx:100775341 296.589