Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01998 ATGTCTTCAAATGAGATCACACAAATGGAAGAAGGTGATCTTAAAGCACAAGCACATGCACAAAGGGATTCTGGATTTTGTGGTTCTCCTGAAGTAGTTCAAATCATACAAAAGGTAATAGCAGAGGTGATAGGAACATACTTCTTGATATTTGCAGGTTGTTGTGTAGTGATTCTTAATAAAGTAGAAGAGACTAAAGGGACAATAACATTTCCTGGAATTTGTGTAACATGGGGTCTATCAGTTATGATCTTGGTTTATTCTCTCGGTCACATTTCCGGTGCTCATTTCAATCCTGCAGTTACAGTTAGCTTCGCCATCTATCGGCATTTCCCACTCAAACAGGTACCATTGTATCTTGTTGCACAGGTGGTAGGATCTGTCCTTGCCAGTGGAACATTGTACCTTTTGTTTGATGTAGATGAAGAATCTTTTTTCGGAACAACGCCGGCAGGATCTAATATGCAATCTCTTGTGTTTGAGATACTCACATCATTTCTTTTGATGTTTGTTGTATCTGCAGTTTCCACAGACAATAGAGCTATTGGAGAATTGGCAGGGATTGCTGTTGGTATGACAATTGTGGTAGATGTCTTCATTGCAGGGCCTGTGTCAGGTGCATCTATGAATCCAGCTAGAACTCTTGGGCCAGCTGTGGTGATGCATAATTACAAAGGATTTTGGGTTTATGTTCTTGGACCTTTTATCGGTGCCATATTAGGTGCCTCAGCCTACAACTTGATTAGATTCACAGACAAACCACTTAGGGAATTAAGCCAAACTGCAAGCTTCCTCAGAAGAGGAAGCTTTCTGTAA 816 0.4069 MSSNEITQMEEGDLKAQAHAQRDSGFCGSPEVVQIIQKVIAEVIGTYFLIFAGCCVVILNKVEETKGTITFPGICVTWGLSVMILVYSLGHISGAHFNPAVTVSFAIYRHFPLKQVPLYLVAQVVGSVLASGTLYLLFDVDEESFFGTTPAGSNMQSLVFEILTSFLLMFVVSAVSTDNRAIGELAGIAVGMTIVVDVFIAGPVSGASMNPARTLGPAVVMHNYKGFWVYVLGPFIGAILGASAYNLIRFTDKPLRELSQTASFLRRGSFL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01998 271 NCBIfam MIP family channel protein 41 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01998 271 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Trre8g01998 271 PANTHER AQUAPORIN NIP2-1 15 263 IPR034294 -
Trre8g01998 271 SUPERFAMILY Aquaporin-like 34 258 IPR023271 -
Trre8g01998 271 CDD MIP 37 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01998 271 Gene3D Glycerol uptake facilitator protein. 2 261 IPR023271 -
Trre8g01998 271 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01998 271 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01998 271 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01998 271 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01998 271 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01998 271 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01998 271 Pfam Major intrinsic protein 33 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01998 Trre-Chr8 15930977 15932791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01998 1 266 Major Intrinsic Protein MIP AT5G37820 61.654 4.69e-121 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01998 K09874 - gmx:100819179 389.423