Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01997 ATGTCTTCAAATGAGATCACACAAATGGAAGAAGGTGATCTTAAAGCACAAGCACATGCACAAAGGGATTCTGGATTTTGTGGTTCTCCTGAAGTAGTTCAAATCATACAAAAGGTAATAGCAGAGGTGATAGGAACATACTTCTTGATATTTGCAGGTTGTTGTGTAGTGATTCTTAATAAAGTAGAAGAGACTAAAGGGACAATAACATTTCCTGGAATTTGTGTAACATGGGGTCTATCAGTTATGATCTTGGTTTATTCTCTCGGTCACATTTCCGGTGCTCATTTCAATCCTGCAGTTACAGTACCATTGTATCTTGTTGCACAGGTGGTAGGATCTGTCCTTGCCAGTGGAACATTGTACCTTTTGTTTGATGTAGATGAAGAATCTTTTTTCGGAACAACGCCGGCAGGATCTAATATGCAATCTCTTGTGTTTGAGATACTCACATCATTTCTTTTGATGTTTGTTGTATCTGCAGTTTCCACAGACAATAGAGCTATTGGAGAATTGGCAGGGATTGCTGTTGGTATGACAATTGTGGTAGATGTCTTCATTGCAGGGCCTGTGTCAGGTGCATCTATGAATCCAGCTAGAACTCTTGGGCCAGCTGTGGTGATGCATAATTACAAAGGATTTTGGGTTTATGTTCTTGGACCTTTTATCGGTGCCATATTAGGTGCCTCAGCCTACAACTTGATTAGATTCACAGACAAACCACTTAGGGAATTAAGCCAAACTGCAAGCTTCCTCAGAAGAGGAAGCTTTCTGTAA 777 0.4028 MSSNEITQMEEGDLKAQAHAQRDSGFCGSPEVVQIIQKVIAEVIGTYFLIFAGCCVVILNKVEETKGTITFPGICVTWGLSVMILVYSLGHISGAHFNPAVTVPLYLVAQVVGSVLASGTLYLLFDVDEESFFGTTPAGSNMQSLVFEILTSFLLMFVVSAVSTDNRAIGELAGIAVGMTIVVDVFIAGPVSGASMNPARTLGPAVVMHNYKGFWVYVLGPFIGAILGASAYNLIRFTDKPLRELSQTASFLRRGSFL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01997 258 Pfam Major intrinsic protein 33 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01997 258 SUPERFAMILY Aquaporin-like 34 245 IPR023271 -
Trre8g01997 258 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01997 258 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01997 258 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01997 258 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01997 258 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01997 258 Gene3D Glycerol uptake facilitator protein. 2 248 IPR023271 -
Trre8g01997 258 PANTHER AQUAPORIN NIP2-1 15 250 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01997 Trre-Chr8 15930977 15932791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01997 1 253 Major Intrinsic Protein MIP AT5G37820 59.023 6.62e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01997 K09874 - gmx:100819179 358.607