Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01996 ATGTCTTCAAATGAGATCACACAAATGGAAGAAGGTGATCTTAAAGCACAAGCACATGCACAAAGGGATTCTGGATTTTGTGGTTCTCCTGAAGTAGTTCAAATCATACAAAAGGTAATAGCAGAGGTGATAGGAACATACTTCTTGATATTTGCAGTTATGATCTTGGTTTATTCTCTCGGTCACATTTCCGGTGCTCATTTCAATCCTGCAGTTACAGTTAGCTTCGCCATCTATCGGCATTTCCCACTCAAACAGGTACCATTGTATCTTGTTGCACAGGTGGTAGGATCTGTCCTTGCCAGTGGAACATTGTACCTTTTGTTTGATGTAGATGAAGAATCTTTTTTCGGAACAACGCCGGCAGGATCTAATATGCAATCTCTTGTGTTTGAGATACTCACATCATTTCTTTTGATGTTTGTTGTATCTGCAGTTTCCACAGACAATAGAGCTATTGGAGAATTGGCAGGGATTGCTGTTGGTATGACAATTGTGGTAGATGTCTTCATTGCAGGGCCTGTGTCAGGTGCATCTATGAATCCAGCTAGAACTCTTGGGCCAGCTGTGGTGATGCATAATTACAAAGGATTTTGGGTTTATGTTCTTGGACCTTTTATCGGTGCCATATTAGGTGCCTCAGCCTACAACTTGATTAGATTCACAGACAAACCACTTAGGGAATTAAGCCAAACTGCAAGCTTCCTCAGAAGAGGAAGCTTTCTGTAA 729 0.4129 MSSNEITQMEEGDLKAQAHAQRDSGFCGSPEVVQIIQKVIAEVIGTYFLIFAVMILVYSLGHISGAHFNPAVTVSFAIYRHFPLKQVPLYLVAQVVGSVLASGTLYLLFDVDEESFFGTTPAGSNMQSLVFEILTSFLLMFVVSAVSTDNRAIGELAGIAVGMTIVVDVFIAGPVSGASMNPARTLGPAVVMHNYKGFWVYVLGPFIGAILGASAYNLIRFTDKPLRELSQTASFLRRGSFL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01996 242 ProSitePatterns MIP family signature. 67 75 IPR022357 -
Trre8g01996 242 Gene3D Glycerol uptake facilitator protein. 2 232 IPR023271 -
Trre8g01996 242 SUPERFAMILY Aquaporin-like 34 229 IPR023271 -
Trre8g01996 242 PANTHER AQUAPORIN NIP2-1 52 234 IPR034294 -
Trre8g01996 242 PRINTS Major intrinsic protein family signature 86 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01996 242 PRINTS Major intrinsic protein family signature 162 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01996 242 PRINTS Major intrinsic protein family signature 199 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01996 242 PRINTS Major intrinsic protein family signature 49 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01996 242 PRINTS Major intrinsic protein family signature 131 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01996 242 Pfam Major intrinsic protein 51 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01996 Trre-Chr8 15930977 15932791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01996 1 237 Major Intrinsic Protein MIP AT5G37820 54.924 8.02e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01996 K09874 - aew:130768857 331.257