Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01977 ATGAGGAAACCTAGTTGTGATATCAAATTAGACAAGAACATCAACAAAGGAGTTTGGTCAAAACAAGAAGACCAGAAACTTATAGATTATATCAACAAACACGGTGAGGTTTGTTGGAGTACACTCCCTCAAGCTGCAGGTCTACTTCGGTGTGGTAAAAGTTGTAGGCTGAGATGGATGAACTATCTAAGGCCAGATGTTAAAAGAGGCAACTTTGGTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCACTTCTAGGCAACAGGTGGTCACTAATTGCTGGGAGATTGCCTGGACGTACGGATAATGAAGTGAAGAACTTTTGGAACTCTAGTATAAGAAAAAAGTTGATTAGAAAAGGAATTGATCCAAATAATCACAATTTACACCACAAAATCCCTCCCCTTCAAAACCAAATCATGTCTAATAGTTTAAATTATTTTGGGTTGAAAGACATTAGCAAGAATCAGACAACTAAAACCCACGTAGACAATTATGATAAAGTCTCGAATGCTACAAGTGGCAATAAGGATGAGTCATATGCTCTATTGGATTTAAATCTAGAGCTCTCACTATGA 582 0.3746 MRKPSCDIKLDKNINKGVWSKQEDQKLIDYINKHGEVCWSTLPQAAGLLRCGKSCRLRWMNYLRPDVKRGNFGEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNFWNSSIRKKLIRKGIDPNNHNLHHKIPPLQNQIMSNSLNYFGLKDISKNQTTKTHVDNYDKVSNATSGNKDESYALLDLNLELSL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01977 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Trre8g01977 193 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Trre8g01977 193 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Trre8g01977 193 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre8g01977 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Trre8g01977 193 FunFam MYB-related transcription factor 15 68 - -
Trre8g01977 193 FunFam MYB transcription factor 70 131 - -
Trre8g01977 193 CDD SANT 71 111 IPR001005 -
Trre8g01977 193 PANTHER MYB DOMAIN PROTEIN 55 4 159 - -
Trre8g01977 193 SMART sant 68 116 IPR001005 -
Trre8g01977 193 SMART sant 15 65 IPR001005 -
Trre8g01977 193 Gene3D - 8 68 - -
Trre8g01977 193 Gene3D - 70 141 - -
Trre8g01977 193 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Trre8g01977 193 CDD SANT 19 63 IPR001005 -
Trre8g01977 193 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01977 Trre-Chr8 15778328 15780525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01977 2 193 MYB Transcription Factor Family AT4G38620 50.237 3.70e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g01977 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01977 K09422 - gmx:100814923 286.574