Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01974 ATGAGAAAAACAAAGTCCTTTTCCTTTCAATTCTTAGCAATAACATGTGTTTTCTTGCTTCACTTTCAATCCATAATTCATGCACAAGACCATATAGCAACTTCAGAAAATGAAGCACTAGGCCTACCAACAGAACCAAAAAGAGAAACACTAGAAATCATCATCGGCGGAGGCGGAGGCGGCGGCAGTTCTTCCCCTGCTCCTTCCCCTGAACCTAACTGTCCTCCTCCTCAACCTCCACCGCATCCTCCTCCAGCACCTCGGCCGCCCCCCACCATTTCCCCCCGACTAGAAAGGGCCCGCAAAACACTTCTCAAATTCGCTAAAACCGTCAAGCCAAATTCGATCACTGCAACATGGACTGAAAAAGAAAAAGATCCATGTAAGTATAAGGGAATCCTTTGTGGCGACTACCCAATTGGTAATCAACGTGCAGTCGCCGGATTAGACTTAAACCAAGGAAGACTCTCAGGTAAAACCTGCGAAAATATACCATTAACCGGTCTCTTAGACGAATTAAAAGAGTTAACATTCTTCCATGTAAACTCCAACAATTTCTCAGATAATATCCCACCACAAATCCTTAAATTCCCTTATTTCTACGAACTTGACCTTAGTAACAACAAATTTGTCGGCGAGTTTCCGACCGTAGTTATTCAATCCACAAATCTAGTTTTTGTAGACCTCAGGTTCAACAATCTACAAGGTCCTATTCCATCACAACTATTTACTAGAGATCTTGACGTAATTTTCATCAATAACAACAAATTCACCGGAAATTTACCTGCGAATTTCGGGTCTACCCCTGCAAGGTACTTAACATTTGCAAGAAATCAATTGACAGGTGAAATTCCTAAAAGTATCGGCGATGCGTCGAAAACTTTAACTGAAGTACTTTTTTTGGGGAATAAATTTGAAGGGTGTTTACCATTTGAAATTGGGTATCTTAAAAAAGCAACAGTTTTTGATGTTAGTGATAATTCATTAACTGGGCCTATTCCAGCTTCATTTGGTTGTTTGGAAAAGATTCAGTTTTTGAATTTGGCAAAAAACAAATTCTATGGTACTGTTCCTGAAAGTGTTTGTGTTCTACCTGGGATAAAAAACAATGGAAATTTATCTTTGTCGGATAATTATTTCACTGCAATTGATCCAGCATGTTGGATTTTGTTGAAATCTAAGGTATTGGATGTTAGTAACAATTGTATTCCTGGTCTTCCTAATCAAAGATCAAAGAAAGATTGTTATGATTTTCAATGTAAAGTGAAGCCATGTTCAAATCATCAGAGTTTGAGTTATGTTCCTTGTAAGACACGTTGGGGTGCTAAACAAGACACTGCTCCTGTTTCTCAAGAAATGGCAACTGAGCCTGTTACTTACAAGTCTCTCAAACCTCATCATCGGTTGAGAATGTGA 1416 0.3919 MRKTKSFSFQFLAITCVFLLHFQSIIHAQDHIATSENEALGLPTEPKRETLEIIIGGGGGGGSSSPAPSPEPNCPPPQPPPHPPPAPRPPPTISPRLERARKTLLKFAKTVKPNSITATWTEKEKDPCKYKGILCGDYPIGNQRAVAGLDLNQGRLSGKTCENIPLTGLLDELKELTFFHVNSNNFSDNIPPQILKFPYFYELDLSNNKFVGEFPTVVIQSTNLVFVDLRFNNLQGPIPSQLFTRDLDVIFINNNKFTGNLPANFGSTPARYLTFARNQLTGEIPKSIGDASKTLTEVLFLGNKFEGCLPFEIGYLKKATVFDVSDNSLTGPIPASFGCLEKIQFLNLAKNKFYGTVPESVCVLPGIKNNGNLSLSDNYFTAIDPACWILLKSKVLDVSNNCIPGLPNQRSKKDCYDFQCKVKPCSNHQSLSYVPCKTRWGAKQDTAPVSQEMATEPVTYKSLKPHHRLRM 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01974 471 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 70 445 - -
Trre8g01974 471 Gene3D Ribonuclease Inhibitor 98 270 IPR032675 -
Trre8g01974 471 Pfam Leucine rich repeat N-terminal domain 100 135 IPR013210 -
Trre8g01974 471 Gene3D Ribonuclease Inhibitor 271 434 IPR032675 -
Trre8g01974 471 MobiDBLite consensus disorder prediction 68 94 - -
Trre8g01974 471 MobiDBLite consensus disorder prediction 54 95 - -
Trre8g01974 471 SUPERFAMILY L domain-like 110 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01974 Trre-Chr8 15748823 15750238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01974 94 421 Leucine-rich Repeat extension Gene Families AT3G24480 40.361 9.27e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01974 - - psat:127108214 626.32