Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01972 ATGGCTTTATCAAAACAACATCTAGTTTCATTTTCAATCACCTTTCTTCTTTGTTTTCATTTGGTAAATTCCCAAATCCTTGGTCCAATATTATCCCCATTAATCCCTTTAATCCCTGACCTATTAGACTTCTTAGACCAAAGATTAGCTATAGTTTTCCCAATCATTCAAGCCTTTAAAAACACAATAACCTCTGACCCTTTAGGAATAACATCAACATGGGAAGGTCCGGATATATGCAATTACACCGGCTTCTACTGCGATAACCTGCCCGATAATCTCACGGCCATCACTGTCGCCTCCATAGATTTCAACGGTTTTCACCTCTCTGCTCCATCTCTCGATGATTTCATCGATCAACTACCTGACTTGGCTATTTTCCATGCTAACTCCAACAGTTTTTCCGGCACCATTTCACCGAAAATTGCATCACTCAAATATTTATACGAGCTTGATCTTAGTAACAATCTTCTCTCCGGAACATTTCCCACTTCAATCCTAAATATGCCAACACTTTCATTCTTAGATATTAGGTACAACCTCTTCACAGGAACAGTTCCTCAACAAATTTTTACACAAACATATTTGGATGCAATTTTCCTTAACAATAACAATTTCCTTCAAACACTTCCCAACAATTTAGGTCAAACAACAGCTTCTTACATTACTTTCGCTAACAATAAATTCACCGGTTCAATCCCTCCTAGCATAGGAAAAGCCGCGTCCACGCTAATCGAAGTTTTATTATTAAACAACCAATTAACCGGTTGTCTTCCTTACGAAATAGGCTTCCTTAAAAACCTCGAACTTTTTGACGCCGGTGGTAACCTTTTAACAGGTCCATTACCATTATCATTTGGGTGTTTGAAGAAAGTTGAGCAGTTAAACTTAGCTAGGAACATGTTGTACGGTCAGGTTCCGGAAGTGGTTTGTACGTTGGGGAATTTGGCGAATTTATCTTTGTCTTATAATTATTTTAATAGAGTTGGACCCTTGTGCAAGAAACTTATCAAAAGTGGTGTGCTTGACCTGAGCAAGAATTGTATTATCGATCTTCCTGATCAGCGATCGATGCAAGAGTGTGTGAAGTTTTATGCATCTCGGAGAACTTGTGCGCGTTCTGGATCGTTTAATGTTACGCCTTGTCAAGTTCCTACACGGGGGAAACCAGGAACTAAGAGGAATTTGTTGACATATTCTGCTCTTGAGAGAAACAGAGTTGTTCTGTAA 1230 0.3894 MALSKQHLVSFSITFLLCFHLVNSQILGPILSPLIPLIPDLLDFLDQRLAIVFPIIQAFKNTITSDPLGITSTWEGPDICNYTGFYCDNLPDNLTAITVASIDFNGFHLSAPSLDDFIDQLPDLAIFHANSNSFSGTISPKIASLKYLYELDLSNNLLSGTFPTSILNMPTLSFLDIRYNLFTGTVPQQIFTQTYLDAIFLNNNNFLQTLPNNLGQTTASYITFANNKFTGSIPPSIGKAASTLIEVLLLNNQLTGCLPYEIGFLKNLELFDAGGNLLTGPLPLSFGCLKKVEQLNLARNMLYGQVPEVVCTLGNLANLSLSYNYFNRVGPLCKKLIKSGVLDLSKNCIIDLPDQRSMQECVKFYASRRTCARSGSFNVTPCQVPTRGKPGTKRNLLTYSALERNRVVL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01972 409 Gene3D Ribonuclease Inhibitor 222 370 IPR032675 -
Trre8g01972 409 Gene3D Ribonuclease Inhibitor 55 221 IPR032675 -
Trre8g01972 409 SUPERFAMILY L domain-like 59 350 - -
Trre8g01972 409 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 40 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01972 Trre-Chr8 15737657 15738886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01972 42 377 Leucine-rich Repeat extension Gene Families AT3G24480 44.643 8.04e-89 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01972 - - gmx:100813314 566.614