Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01961 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCTATGTCCGGTCCTAATGGTGGTGGTGGTGGTGCTGCGGCTGCTGCAGCAGCGGCGGCTGGTGCTGGTGGAAATCAGTTTGTGACGACTTCGCTTTACGTTGGAGATCTGGATCCAAATGTGACGGATTCTCAGCTCTATGACTTGTTCAATCAATTGGGTCAAGTTGTGTCTGTTAGGGTTTGCAGGGATTTGACCACTAGGAGGTCACTTGGTTATGGTTATGTCAACTTTAGCAACCCGCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAACAACAGGCCCATTCGTATCATGTATTCACATCGCGATCCCAGTATCCGCAAAAGTGGTCAAGGAAATATATTTATTAAGAATTTGGACAGGGCAATTGACCATAAGGCATTGCACGATACCTTTTCTTCATTTGGGAATATCCTTTCTTGCAAGGTAGCTGTGGATGGATCTGGCCAATCTAAAGGCTATGGCTTTGTGCAATTCGATACTGAGGAGGCTGCTCAAAAAGCTATTGAAAAGCTTAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAAGTACAACTGACCGGGTAAAATTCAACAATGTTTTTGTTAAGAATCTCTCTGAATCAACCACTGATGATGAGTTGAAGAAGGTTTTTGGTGAATTTGGAACAATTACCAGTGCTGTAGTAATGAGGGATGGGGATGGGAAATCAAAGTGCTTTGGATTTGTAAACTTTGAGAGTACCGATGATGCTGCTAGGGCTGTTGAGGCTCTTAATGGGAAAAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCAGAAAGGGAACATGAACTGAAAGTTAAATTTGAGCAGAGCATGAAAGAGGCTGCGGATAAATATCAAGGGGCAAACTTGTATGTAAAAAATTTGGACGATAGCATCGTTGATGATAAACTTAAGGAGCTGTTCTCCTCTTTTGGTACAATTACCTCTTGCAAGGTAATGAGAGACCCCAATGGCATAAGTCGAGGATCTGGGTTTGTTGCATTCTCTACTCCTGAGGAGGCATCTAGAGCTCTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTGGCCCAGCGGAAAGAAGATAGGAGAGCTCGGTTGCAGGCTCAGTTTGCTCAAATGCGTCCTGTCACGATGCCGCCATCTGTTGCTCCTCGCATGCCTATGTATCCCCCTGGAGGTCCTGGTATGGGTCAACAAATATTTTACGGTCAAGGCCCTCCTGCCATTATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTACCTGGAATGAGGCCTGGTGGGGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAGCAAGGGCAGCGTCCTGGTGGAAGGCGTGGAGGTGCAGTCCAGCAGTCCCAGCAGCCAGTTCCGCTTATGCCACAACAGATGCTCCCTAGGGGGCGTGTGTATCGCTATCCTCCTGGTAGGGGAATGCCTGACGGTCCCATGCCTGGAGTTGCTGGAGGCATGTATTCTGTTCCTTATGATGTGGGTGGGATGCCCCTTCGCGATGCATCACTTTCCCAGCAAATTCCAATTGGTGCTTTGGCTTCTCATTTGGCTAATGCCTCTCCTGAGCAGCAGAGAACGATGCTGGGTGAGAATCTGTACCCCCTTGTGGAACAGTTGGAGCCTGACAATGCTGCCAAAGTTACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCACCAGAGGCCCTGAAAGCAAAGGTGGCAGAGGCAATGGACGTTCTTAGGAATGTTGCGCAGCAGCAGGCTGGTGGTGCTGCTGATCAGCTGTCTTCATTGTCACTCAATGACAGCCTTGCTTCTTAA 1983 0.475 MAQVQVQPQNAMSGPNGGGGGAAAAAAAAAGAGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTTDRVKFNNVFVKNLSESTTDDELKKVFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKVKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVTMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRGGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVGGMPLRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDSLAS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01961 660 Gene3D - 558 641 - -
Trre8g01961 660 SMART rrm2_1 220 292 IPR003954 GO:0003676
Trre8g01961 660 SMART rrm2_1 41 114 IPR003954 GO:0003676
Trre8g01961 660 SMART rrm2_1 129 201 IPR003954 GO:0003676
Trre8g01961 660 SMART rrm2_1 323 395 IPR003954 GO:0003676
Trre8g01961 660 FunFam Polyadenylate-binding protein 210 304 - -
Trre8g01961 660 PANTHER RNA BINDING PROTEIN 39 102 - -
Trre8g01961 660 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 562 639 IPR002004 GO:0003723
Trre8g01961 660 FunFam Polyadenylate-binding protein 26 125 - -
Trre8g01961 660 FunFam Polyadenylate-binding protein 305 410 - -
Trre8g01961 660 Gene3D - 304 408 IPR012677 -
Trre8g01961 660 Gene3D - 35 128 IPR012677 -
Trre8g01961 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Trre8g01961 660 SUPERFAMILY PABC (PABP) domain 503 652 IPR036053 GO:0003723
Trre8g01961 660 FunFam Polyadenylate-binding protein 558 640 - -
Trre8g01961 660 CDD RRM3_I_PABPs 218 297 - -
Trre8g01961 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Trre8g01961 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 392 IPR000504 GO:0003723
Trre8g01961 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 289 IPR000504 GO:0003723
Trre8g01961 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 198 IPR000504 GO:0003723
Trre8g01961 660 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 41 635 IPR006515 GO:0003723
Trre8g01961 660 CDD RRM4_I_PABPs 321 399 - -
Trre8g01961 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 200 IPR000504 GO:0003723
Trre8g01961 660 SMART poly_2 574 637 IPR002004 GO:0003723
Trre8g01961 660 Gene3D - 129 201 IPR012677 -
Trre8g01961 660 MobiDBLite consensus disorder prediction 484 504 - -
Trre8g01961 660 SUPERFAMILY RNA-binding domain, RBD 219 401 IPR035979 GO:0003676
Trre8g01961 660 CDD RRM2_I_PABPs 126 202 IPR045305 -
Trre8g01961 660 FunFam Polyadenylate-binding protein 126 209 - -
Trre8g01961 660 CDD RRM1_I_PABPs 41 120 IPR034364 -
Trre8g01961 660 SUPERFAMILY RNA-binding domain, RBD 40 209 IPR035979 GO:0003676
Trre8g01961 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Trre8g01961 660 Pfam Poly-adenylate binding protein, unique domain 570 634 IPR002004 GO:0003723
Trre8g01961 660 SMART rrm1_1 323 395 IPR000504 GO:0003723
Trre8g01961 660 SMART rrm1_1 41 114 IPR000504 GO:0003723
Trre8g01961 660 SMART rrm1_1 129 201 IPR000504 GO:0003723
Trre8g01961 660 SMART rrm1_1 220 292 IPR000504 GO:0003723
Trre8g01961 660 Gene3D - 204 303 IPR012677 -
Trre8g01961 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01961 Trre-Chr8 15651201 15655655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01961 39 658 Eukaryotic Initiation Factors Gene Family AT1G49760 76.349 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01961 K13126 - gmx:100813735 1113.6