Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01956 ATGGAGAAATTGGAGCAAGTTCAATGCTTTGGCCGCAAGAAGAACGCGGTTGCCGTCACTCACTGCAAGCGCGGCCGTGGATTGATCAAGATCAACGGAGCTCCTATCGAATTGGTTGAACCAGAAATCCTCCGTTTCAAGGCCTTGGAACCAATCCTCTTGTTAGGGAAAAACCGTTTCGCCGGCGTCGACATGCGCATCCGTGTCAAGGGCGGTGGTAAAATTTCTCAGACTTACGCCACCAGACAAAGTATCGGTAAGGCTATTGTTGCTTTCTACCAAAAGTATGTTGATGAACACAGCAAGAACGAGATTAAGGATATTCTTATTCGTTACGATCGTACCTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCAAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTCCAGAAATCTTACCGTTGA 432 0.4769 MEKLEQVQCFGRKKNAVAVTHCKRGRGLIKINGAPIELVEPEILRFKALEPILLLGKNRFAGVDMRIRVKGGGKISQTYATRQSIGKAIVAFYQKYVDEHSKNEIKDILIRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01956 143 FunFam 40S ribosomal protein S16 1 143 - -
Trre8g01956 143 Gene3D - 1 143 IPR014721 -
Trre8g01956 143 Pfam Ribosomal protein S9/S16 11 143 IPR000754 GO:0003735|GO:0005840|GO:0006412
Trre8g01956 143 ProSitePatterns Ribosomal protein S9 signature. 71 89 IPR020574 GO:0003735|GO:0005840|GO:0006412
Trre8g01956 143 PANTHER RIBOSOMAL PROTEIN S9 4 140 IPR000754 GO:0003735|GO:0005840|GO:0006412
Trre8g01956 143 SUPERFAMILY Ribosomal protein S5 domain 2-like 6 143 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01956 Trre-Chr8 15615288 15615719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01956 5 143 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 82.734 2.04e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01956 K02960 - gmx:100812117 254.218