Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01952 ATGCAAGGACAAAGGAGGACTATTGGGTCCTTCCCGGCAATTGTTAGCATGATGCAAGGGCCTAGTTCGAGTGGCACCGATACAAATCGTCAGTCTTCCTTGAATCATGTGCAAAATTCAGTTGATTTCCGGTTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCGTGTTTACGTGGCACTGGTCCTAATGTGAACTTTAGTGGCTGGAATACTGGTGAACCCAATTCTGGACTGAATCCGATTGACCAAGTCGAAGACGAAGATCTAAAATCAGAACATAGGTTGTCTTCTTCATACGGTGCTACTTCTGAGGATGGTGTAAGACCTGAGGAAGGGCAATTACCTGGGAACCAATCCAGAAACCACCCTTCCTTTTTGCAAGGTTCCAGCTCCAATCATACAGCCCAGAGTATTAATCTCGGTATGGGGCACATTTCGAACTCTTCTGATCGCGGTAAAGGAAAAGAGACTAGTAGTGGTGTTAATAACCACAATCATTGTGAATTAGATATAGAGAAGACATCACTTGGCAGTTCTTCATTTAATCATATAGGAACTCCGTCTGCAAGCTCTGGATACATGGCTTGGGGAGATTGTGGTAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCTTGCAAGAGAAAGGCCCTTGAAGGAAGTTCTATGCAACTGTGTACTGGAGGAAGCTCGAGTTCCCTTGTACAATCTGGAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGCTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTTCGTGTTACTAGTCCTCCATTTCAGCAGAGTACAAGAAATGAAGTGAGACAAGAAACTTCAAATATGTTTCCTTCTATGATAAGTATTGCGGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCATCTACAGCATCCGGAATCTGTACCTCTTAATTTAACATCAACAGGGAGTACAAGACATCATAATCACCCTTCTCCGCATCAAATACCCGGCTCTTTCTCATTTAACGAGTCCTTGGATTTGAGGTTAACAGCTGGAGCAACAGCTGCCAATTCTGCTGTGCCTCAAAATCAGTCACCTGCCCTGCATATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGTCCAGATCTTCAAGTTCTTATAACTCGGGAGAAAGAGCAGTACGTGAAGATTTTAATTTTAGAATCTTCCCAAGAGATAGTACCGAGCATCCCATGAACGTGCCTGCATCTTCAGGACATGAACCTCCAGGTTGGTATACATCTTCCAGTAATGTGAACAATGCTGGAGGTATGCCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTCCACTCATCACCTAATCCTGGCTGGACTTTTAACCATGAAGTCCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCGTGGTCCCTTTTTCCTTCAATCAGTTCAGCATCTGGTACTCATAATGGCCATTCCTCCTCTACTTCCGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGCAATCAACCATATCCAAGAACATCATATTTGACGGAAAGAAGGGGCAGTGATGTTCTCTCTGCTCCTCATTCACTGCGAACATTACCCTCTGACAACGAGGGGAGACGACGGCTTATATCTGAGATTCGTCAAGTCCTGATTGCAATGCGGAGGGGTGAGAACTTGCGTGCCGAGGATTATATGCTCTTTGACCCTTTCTTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGACGTTGATAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGAATAGGAGACGTAAGCACTGGACTGAGTGAAGATATGATTAATAAGTTTATGAAACAGCGATTTCACATGTCTCTCATGACAGAGTCTTCTTCCGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGACAGAGTATTGGTTTGCTAGATTGTGGGCACGAGTTCCACAGTAACTGCATCATGCAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACAGCCTTGGCTACGTGA 2100 0.4429 MQGQRRTIGSFPAIVSMMQGPSSSGTDTNRQSSLNHVQNSVDFRLSDYRGSSGETACLRGTGPNVNFSGWNTGEPNSGLNPIDQVEDEDLKSEHRLSSSYGATSEDGVRPEEGQLPGNQSRNHPSFLQGSSSNHTAQSINLGMGHISNSSDRGKGKETSSGVNNHNHCELDIEKTSLGSSSFNHIGTPSASSGYMAWGDCGSSSSSLANWGPSCKRKALEGSSMQLCTGGSSSSLVQSGNGYWLTDSVDLNAPGSLGDLSPLEDFRVTSPPFQQSTRNEVRQETSNMFPSMISIAENVERPLRNFDRRITHLQHPESVPLNLTSTGSTRHHNHPSPHQIPGSFSFNESLDLRLTAGATAANSAVPQNQSPALHMHPFPWNRAANPRVSRSSSSYNSGERAVREDFNFRIFPRDSTEHPMNVPASSGHEPPGWYTSSSNVNNAGGMPPPSWIGSSSNVHSSPNPGWTFNHEVPTENLQRVSEFSPWSLFPSISSASGTHNGHSSSTSGPPSFSQGSSSNQPYPRTSYLTERRGSDVLSAPHSLRTLPSDNEGRRRLISEIRQVLIAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDMINKFMKQRFHMSLMTESSSDLEPCCICQEEYADGQSIGLLDCGHEFHSNCIMQWLMQKNLCPICKTTALAT 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01952 699 MobiDBLite consensus disorder prediction 56 165 - -
Trre8g01952 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 210 697 IPR045191 GO:0061630
Trre8g01952 699 SUPERFAMILY RING/U-box 634 696 - -
Trre8g01952 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 697 IPR013083 -
Trre8g01952 699 Pfam Ring finger domain 652 693 IPR001841 -
Trre8g01952 699 ProSiteProfiles Zinc finger RING-type profile. 652 693 IPR001841 -
Trre8g01952 699 SMART ring_2 652 692 IPR001841 -
Trre8g01952 699 MobiDBLite consensus disorder prediction 493 525 - -
Trre8g01952 699 MobiDBLite consensus disorder prediction 16 33 - -
Trre8g01952 699 MobiDBLite consensus disorder prediction 1 33 - -
Trre8g01952 699 MobiDBLite consensus disorder prediction 115 165 - -
Trre8g01952 699 FunFam E3 ubiquitin-protein ligase MBR2 619 697 - -
Trre8g01952 699 MobiDBLite consensus disorder prediction 429 469 - -
Trre8g01952 699 MobiDBLite consensus disorder prediction 57 79 - -
Trre8g01952 699 MobiDBLite consensus disorder prediction 412 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01952 Trre-Chr8 15560981 15564109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01952 1 699 C3H Transcription Factor Family AT2G15530 36.919 3.96e-107 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01952 - K19041 gmx:100809024 1044.26