Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01951 ATGAGTGTAGATCACGATCAAGGTGTTCAGTCTGATTTCATATGGGAAAATCCACCTTGGTTTGATCTCACAAATTCTGATAACTTAGGTGAGAGTAGCAAACAAAAGTTAGACATGAAATCAATGAACCTGGACGTAGAAATTAACGAAGGAGAAGCTCTTGCAAATAAGAAGCGAAAGCGAGGTGGGGCTGTGGCTAGAAGTGAGAGTAATACTACAATTGGTGAAGGAAAAGATGGAAAAAATCGCAATTTTGATCATGAAATGCACATATTAACTGAGAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGCTAGCCTTCATGCTTTGCTTCCTCAGCTTCCTTCTAAGGCTGATAAATCAACCATTGTGGATGAAGCTGTGAAGCAAATAAAAAATTTACAACAAATTCTTCAAAACCTAGAAAAGAAGAAGCAAGAAAAACTCAAATCTGTATCCCCATTTGGGACAGAATCATCATCAGTGATCAACAACACACAGTGGCATCCCTATGAATCAAGGGAAGCAATCTTAACTGATCAAGGGTCCTCAAGTTATAATAATAACTTGGCTACAAGTGCAATTGTAACTTCAAATGCATTATCAATATCTGCACCCCCACCTCAACTAGTAGCTTTTCAAACTTGGTCTTCTCAAAATGTTGTCTTGAACATTTGTGGTGAGGAAGCACAATTTTGCATATGTGCTACTAAGAAGCCAGGTCTCTTAACAACAATTGCTTTTGTGTTTGAGAAACATAGGATTGATATTGTATCTGCCAACATTTCTTGCAATGGAAATGGTAACTTCTACATGATTATGGCCCTTGCAAAACAAGGTTCATATCAAGACGCAAATTCATTGGAGGAAACTTACAAGCAAGCGGCTTCAGAAATTATGATGTGGATCTCTTAA 918 0.3769 MSVDHDQGVQSDFIWENPPWFDLTNSDNLGESSKQKLDMKSMNLDVEINEGEALANKKRKRGGAVARSESNTTIGEGKDGKNRNFDHEMHILTERERRKKMRNMFASLHALLPQLPSKADKSTIVDEAVKQIKNLQQILQNLEKKKQEKLKSVSPFGTESSSVINNTQWHPYESREAILTDQGSSSYNNNLATSAIVTSNALSISAPPPQLVAFQTWSSQNVVLNICGEEAQFCICATKKPGLLTTIAFVFEKHRIDIVSANISCNGNGNFYMIMALAKQGSYQDANSLEETYKQAASEIMMWIS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01951 305 Gene3D - 78 152 IPR036638 GO:0046983
Trre8g01951 305 CDD ACT 240 275 - -
Trre8g01951 305 SMART finulus 91 141 IPR011598 GO:0046983
Trre8g01951 305 MobiDBLite consensus disorder prediction 55 86 - -
Trre8g01951 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 156 IPR036638 GO:0046983
Trre8g01951 305 CDD bHLH_AtbHLH_like 90 137 IPR045239 -
Trre8g01951 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 135 IPR011598 GO:0046983
Trre8g01951 305 Pfam Helix-loop-helix DNA-binding domain 88 136 IPR011598 GO:0046983
Trre8g01951 305 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 14 20 IPR002052 GO:0003676|GO:0008168|GO:0032259
Trre8g01951 305 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 34 304 IPR044278 GO:0003700|GO:0006355|GO:0009960
Trre8g01951 305 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01951 Trre-Chr8 15542788 15546016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01951 72 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.235 9.30e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g01951 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01951 - - psat:127104597 376.326