Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01950 ATGGTCATGAGTGTAGATCACGATCAAGGTGTTCAGTCTGATTTCATATGGGAAAATCCACCTTGGTTTGATCTCACAAATTCTGATAACTTAGGTGAGAGTAGCAAACAAAAGTTAGACATGAAATCAATGAACCTGGACGTAGAAATTAACGAAGGAGAAGCTCTTGCAAATAAGAAGCGAAAGCGAGGTGGGGCTGTGGCTAGAAGTGAGAGTAATACTACAATTGGTGAAGGAAAAGATGGAAAAAATCGCAATTTTGATCATGAAATGCACATATTAACTGAGAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGCTAGCCTTCATGCTTTGCTTCCTCAGCTTCCTTCTAAGGCTGATAAATCAACCATTGTGGATGAAGCTGTGAAGCAAATAAAAAATTTACAACAAATTCTTCAAAACCTAGAAAAGAAGAAGCAAGAAAAACTCAAATCTGTATCCCCATTTGGGACAGAATCATCATCAGTGATCAACAACACACAGTGGCATCCCTATGAATCAAGGGAAGCAATCTTAACTGATCAAGGGTCCTCAAGTTATAATAATAACTTGGCTACAAGTGCAATTGTAACTTCAAATGCATTATCAATATCTGCACCCCCACCTCAACTAGTAGCTTTTCAAACTTGGTCTTCTCAAAATGTTGTCTTGAACATTTGTGGTGAGGAAGCACAATTTTGCATATGTGCTACTAAGAAGCCAGGTCTCTTAACAACAATTGCTTTTGTGTTTGAGAAACATAGGATTGATATTGTATCTGCCAACATTTCTTGCAATGGAAATGGTAACTTCTACATGATTATGGCCCTTGCAAAACAAGGTTCATATCAAGACGCAAATTCATTGGAGGAAACTTACAAGCAAGCGGCTTCAGAAATTATGATGTGGATCTCTTAA 924 0.3777 MVMSVDHDQGVQSDFIWENPPWFDLTNSDNLGESSKQKLDMKSMNLDVEINEGEALANKKRKRGGAVARSESNTTIGEGKDGKNRNFDHEMHILTERERRKKMRNMFASLHALLPQLPSKADKSTIVDEAVKQIKNLQQILQNLEKKKQEKLKSVSPFGTESSSVINNTQWHPYESREAILTDQGSSSYNNNLATSAIVTSNALSISAPPPQLVAFQTWSSQNVVLNICGEEAQFCICATKKPGLLTTIAFVFEKHRIDIVSANISCNGNGNFYMIMALAKQGSYQDANSLEETYKQAASEIMMWIS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01950 307 CDD ACT 242 277 - -
Trre8g01950 307 MobiDBLite consensus disorder prediction 57 88 - -
Trre8g01950 307 Gene3D - 80 154 IPR036638 GO:0046983
Trre8g01950 307 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 35 306 IPR044278 GO:0003700|GO:0006355|GO:0009960
Trre8g01950 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 158 IPR036638 GO:0046983
Trre8g01950 307 CDD bHLH_AtbHLH_like 92 139 IPR045239 -
Trre8g01950 307 SMART finulus 93 143 IPR011598 GO:0046983
Trre8g01950 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 137 IPR011598 GO:0046983
Trre8g01950 307 Coils Coil 127 154 - -
Trre8g01950 307 Pfam Helix-loop-helix DNA-binding domain 90 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01950 Trre-Chr8 15542788 15546022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01950 74 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.235 1.04e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g01950 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01950 - - psat:127104597 376.711