Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01949 ATGCGTGGCGTTTTACAACCGTTGGATTTAGGGATTCAAATTCCCTACCACTTCAGATGCCCAATCTCTCTTGAGCTTATGCGAGACCCTGTTACCGTCTCCACCGGTCAAACTTACGACCGTAACAGCATCGAGTCGTGGATTAACACCGGTAACACCACGTGTCCGGTCACGCGAGTTAATCTCACAGATTTCACCTTCATACCAAATCACACACTCCGCCGCTTAATCCAAGAGTGGTGCGTTGCTAACCGCGCTTTTGGTGTTCAGCGGATTCCAACTCCCAAACAACCCGCAGACCCTTCTCTTGTTCGTTCTTTGCTTAATCAAATTTCTTCCCATTCTGCCCCTGCTCAAATTAAACTTAACTCGCTTCGTCGACTCAGATCATTAGCTCGTGACTCGGATTATAACCGTTCTCTTATTGCTTCTCTCAACGTTCGTCATATTGTGTTACCTATTCTTTTCGATTACAACGGTTTAGACGAGTTGAAATATGAGTCACTGGCTTTGCTTGTTCTTTTTCCACTCAGTGAGTCAGAATGCACTTCACTCGCTTCCGATTCAGATAAGATTAACTACCTCACGAGTCTTCTTTCACACTCTTTGTTTGATGTCCGAGTTAACTCGGCCGCGTTAATTGAAATCGTTGTCTCCGGGACTCACTTGCCGGAGATCCGTGCTCAGGTCAGTAATGTTGACGGGATCTACGACGGCGTTGTGGAGATACTCAGGAATCCGATCTCGTATCCTCGTGCGCTCAAGGTAGGGATTAAAGCCTTGTTCGCGTTATGTTTGGTGAAACAGACGCGCCACCGTGCAGTTGCCGCCGGTGCGCCTGCAGTACTTGTCGATCGGCTTGCTGATTTCGAGAAGTGTGATGCGGAGAGGGCGTTGGCGACGGTTGAGTTATTGTGCCGAGTTCCGGCAGGTTGTGCGGCGTTTGCCGGTCATGCGCTAACAGTACCGATGCTTGTGAAGATAATACTGAAGATATCGGATCGTGCGACGGAGTACGCTGCCGGAGCACTTATGGCACTGTGTTCGGAATCGGAACGGTGTCAGCGTGAGGCGGTTGCGGCGGGAGTGCTGACTCAGCTTTTGCTTCTTGTTCAAAGTGATTGCACAGAGAGAGCGAAGAGGAAAGCGCAATTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCCGTCGGAAATTCTGACGATTTTGCATGCAGACATTTTGACTAA 1236 0.4919 MRGVLQPLDLGIQIPYHFRCPISLELMRDPVTVSTGQTYDRNSIESWINTGNTTCPVTRVNLTDFTFIPNHTLRRLIQEWCVANRAFGVQRIPTPKQPADPSLVRSLLNQISSHSAPAQIKLNSLRRLRSLARDSDYNRSLIASLNVRHIVLPILFDYNGLDELKYESLALLVLFPLSESECTSLASDSDKINYLTSLLSHSLFDVRVNSAALIEIVVSGTHLPEIRAQVSNVDGIYDGVVEILRNPISYPRALKVGIKALFALCLVKQTRHRAVAAGAPAVLVDRLADFEKCDAERALATVELLCRVPAGCAAFAGHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSVGNSDDFACRHFD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01949 411 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Trre8g01949 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 90 IPR013083 -
Trre8g01949 411 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Trre8g01949 411 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Trre8g01949 411 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Trre8g01949 411 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Trre8g01949 411 SUPERFAMILY RING/U-box 12 89 - -
Trre8g01949 411 CDD RING-Ubox_PUB 15 67 IPR045210 -
Trre8g01949 411 Gene3D - 91 402 IPR011989 -
Trre8g01949 411 FunFam RING-type E3 ubiquitin transferase 8 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01949 Trre-Chr8 15525513 15526748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01949 1 405 U-box Gene Family AT1G49780 65.617 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01949 - - var:108341190 662.529