Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01946 ATGTTCCTCTACAGATTTCCCTCTTTGTTGGGATTGTTACATTTTCTTGGAATGCACTTACCTCTTCTAATGGCTGAATGCCCTTTGGATTTTGCTGCTTCAAACTTTACACTGGCGTCCACTTTATGCTCTGACCAAGGTGAGCGAGGAAAATGTTGCCGCTACATTAATGCTAATATTGCAATTTCTGTTGCTCGTTTTGCTAATACAACAAGCAACCTAGGGGTCCCTCTAAATACCTCTGATATCTGCCTTCGAACCATATCTCAGACCTTGCAACTTTATGGAGTTCCACCACTTGCAGCAGTTTTCTGTGGATTTGGGACAAAAATTCGTGTTAATTATGAATGCAAAGGTCGGACTAGTGTCATGCAGATGCTGCAATCTCCCAGATTTATGGAGGTCACAAAATATTGCAAATTGCCACTTGGAGAGGAAAGTAAATGTAAAAAGTGCTTAAACGCCAGCATTGGTTATCTGCATCATTTAGGAATTAATGATAATATTACATTGAGTACATGCCGTGATGCCAGTTTTACTGCACTAGCAAGCCAAGTTGATAAGATGTATACCACTGATATTGCAAGTTGTTTCTTTGGCGTCCAAGGACTTCTCGGGCCTACTGTTTCAGAGTCATCCTCACCATTACCTGCTCCCGAGGCTTCTCCGAGTCCGCTGGTTGCTGCTGATAGCCCAAGTCAACTATTGTTAGGTCTACCTTCTAAGGGAAAACACCATTCATATCACTTGACATTAGTTCCATGCATTGCTATTGCAGTTACCGCTGTTGCTTTTGTGATGTTCATAGTCTTGATAATTCTAATTCGGCAAAAAAGAAGAGAGCTAGATGAGCCTGGTAATGTTGCTAAACCCCATTCGAAAACCTTACCACCTATGCCAACATGGAAATTTCAGGAAGGCTCTTCATCTATGTTTCGAAAGTTCAACTTCAAAGAGATAAAGAAGGCAACAGAGGGGTTTAGCACCGTCATTGGCCAAGGTGGCTTCGGAACAGTATATAAAGCTCATTTTAGTGATGGCCAAGTTGCAGCGGTAAAGCGGATGAACAGAGTCTCGGAACAGGGAGAGGATGACTTCTGCCGAGAAATTGAGCTTCTTGCTCGACTACACCATCGCCATCTTGTTGCGTTAAGAGGCTTTTGTATCAATAAACAAGAAAGGTTTCTGTTGTACGAGTACATGGGAAATGGAAGCTTAAAAGATCATCTTCATTCCCCTGGTAAAACACCATTAAGTTGGCGAACTAGAATCCAAATTGTTATTGATGTGGCCAACGCCCTGGAATACCTTCATTTCTATTGTGATCCTCCGCTTTGTCACAGAGATATCAAGGCTAGCAACACTTTACTAGACGAGAATTTTGTTGCTAAGATAGCTGATTTTGGCCTTGCACAAGCTTCAAAAGATGGTTCGATATGCTTTGAACCTGTAAATACCGAAATCTGGGGAACTCCAGGTTATATGGATCCAGAATATGTTGTTACTCAAGAGCTCACCGAGAAAAGCGATATATACAGTTTCGGGGTGTTACTACTGGAAATTGTGACAGGAAGAAGAGCTATTCAAGATCATAAGAATTTGGTAGAATGGGCCAAACCATACATGGAATCAGAAACTAGATTATTAGAGCTAGTAGATCCTAATGTGAGGGAGTCTTTTGACTTGGATCAGCTTCAAACAGTAATCTCTATAGTAGGATGGTGCACACAGAGAGAAGGAAGGGCAAGGCCTTCAATAAAACAAGTACTTAGGCTTCTGTATGAGACATCAGAACCAATGCACAATGAGTTTCTACAAGCTGTTGAAGATGAGGAGAATCAAGGAAATGAGCAGAGAGGCAGAAGAAGCAAAGGGAAAATGTTCAGAATTGAAGGAAATTTTCACAGCGGGGATGGAAGATATCTTGCTTCGTCCTCGAGTACATCTCGGTCATATTGTAGTAGAAGCTATTTACTAGAAAATGGGTCGTCGCAATCATCACCAAATAAACTTTCATTCTGA 2022 0.4144 MFLYRFPSLLGLLHFLGMHLPLLMAECPLDFAASNFTLASTLCSDQGERGKCCRYINANIAISVARFANTTSNLGVPLNTSDICLRTISQTLQLYGVPPLAAVFCGFGTKIRVNYECKGRTSVMQMLQSPRFMEVTKYCKLPLGEESKCKKCLNASIGYLHHLGINDNITLSTCRDASFTALASQVDKMYTTDIASCFFGVQGLLGPTVSESSSPLPAPEASPSPLVAADSPSQLLLGLPSKGKHHSYHLTLVPCIAIAVTAVAFVMFIVLIILIRQKRRELDEPGNVAKPHSKTLPPMPTWKFQEGSSSMFRKFNFKEIKKATEGFSTVIGQGGFGTVYKAHFSDGQVAAVKRMNRVSEQGEDDFCREIELLARLHHRHLVALRGFCINKQERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIVIDVANALEYLHFYCDPPLCHRDIKASNTLLDENFVAKIADFGLAQASKDGSICFEPVNTEIWGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDHKNLVEWAKPYMESETRLLELVDPNVRESFDLDQLQTVISIVGWCTQREGRARPSIKQVLRLLYETSEPMHNEFLQAVEDEENQGNEQRGRRSKGKMFRIEGNFHSGDGRYLASSSSTSRSYCSRSYLLENGSSQSSPNKLSF 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01946 673 FunFam Putative receptor-like protein kinase 294 400 - -
Trre8g01946 673 MobiDBLite consensus disorder prediction 607 633 - -
Trre8g01946 673 PANTHER OS01G0750732 PROTEIN 192 615 - -
Trre8g01946 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Trre8g01946 673 SMART serkin_6 325 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01946 673 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Trre8g01946 673 Gene3D Phosphorylase Kinase; domain 1 299 400 - -
Trre8g01946 673 FunFam Putative receptor-like protein kinase 401 601 - -
Trre8g01946 673 ProSiteProfiles Protein kinase domain profile. 325 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01946 673 Gene3D Transferase(Phosphotransferase) domain 1 401 620 - -
Trre8g01946 673 MobiDBLite consensus disorder prediction 607 647 - -
Trre8g01946 673 Pfam Protein kinase domain 329 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01946 673 SUPERFAMILY Protein kinase-like (PK-like) 305 596 IPR011009 -
Trre8g01946 673 CDD STKc_IRAK 331 593 - -
Trre8g01946 673 Pfam SPARK 25 166 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01946 Trre-Chr8 15489025 15494083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01946 19 673 Receptor kinase-like Gene Family AT3G19300 60.091 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Trre8g01946 Pkinase 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01946 - - gmx:100807955 1066.22