Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01945 ATGTTTGGTGATCGCTTTGATATTGAGGTTCATCGGTTGCTTCTAAATTCGAGGTGGGTTCGTGTGAACACAGATGCATCGAGGGGTCTTCTAGTGTTGCTGATTGTAGTGGGGACATCCAGGCCTCTAATGGCAGGACCAGAGGGAGTATATAATATAACCCACCGACCTAACCCGACTCTTGTGTTTCTTCAAAATTACACCCAACCAACAACAAGAACAACACCTCAATCACGGATTCACGCCTCTGAACCATCATCGGATTTGTTTCCTCATAATCACCTCAATAATTCTCCATTTACTCCCACTAATTATTGGAAATTCTGGTGTTGTAGTACACTGATGGCTAACTCAGGTAACAAATCTACGCCAACAATGTCGTTGGATTCCATGGAACAGAAGGGGAAAAATATTGCTGAATCAAATGCAAGCATAATTCAATGTCCTATAAGCCAGCAATGTCGTAGCACCTTAGATGGTCCAGTATCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCAGAAGATGTGGCAGGTAATATAAGAATGGCTCTGCAGGTGCACCCTGTAATTACAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGACGCTGCCGACAAAGCAATCTTGGTCGACATGTTCTTATTTGCTCTTGACAATCCCCCACCATCCTCTATCATGCTAATCTCTGGAGACGTTGATTTTGCTCCAGCGCTACACATTCTTGGTCAGCGGGGATACACTATAATTCTTGTCATCCCTGCTGGGGTTGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTGTTGTGGCTCGTGGAGAAGGTTTCGTCCCCCCCTCAAAGGCTTTGGCGCCACCTCGTGGAGGTTCAATTGAACTCTCTGGATATTTGATGGGATGCCATATCAATGACAGCACTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGCTATTACAACTCAAGGGAATACTCAGTGGTATCACAATCTCTGTCTGAATATAACTCACCGCACGTGTCTTACTTACCAACATCTCTGAGATCATATAGCCTTCCATCTGGATTGAATGATGTTGCTGGAGGACCTGTCCCTTCTAGCGACAATACTGAATGCCAGATATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGTCAGATAATAAGGTTACTCGAACTTTCTGGAGGATGCCTGCCCTTGGTCCGAGTACCAGCAGAGTACCAGAAAATTTTTGGTAAGCCACTCTTTATATCTGAATATGGGGCATTTAAGTTGGTCAATCTTTTCAAAAAAATGGACGATGCCATTTCTGTGGAAGGGAAAGGGGCTCGCAGACTTGTGTATCTCAGAAACAGGAAGGGAGGATCAGGTGCTCCTCCGCTGTCTCTTGCAAAGAAAGATAAGAAAGGAAAAAGGGTGCTGGAAGAGAATGCAAATGCTGTCATTGGTGGCTGCTCTTCGGATGAGTTGTCAGATGAAGAAAGAGTAGTCATAGAAGAACGCGAGGAAAGAAGTTTTAATGGAAAGTGTAATAAGGGGAGAGCAGCCAGATGTGAAATTGATGGCCGTGTTCTTGAGCAGTTTAAGTGTGAGCTGCAGGAGATTCTGGTCAGCTATTCCTGTTGGATATGTCTAAGTAAATTTGAAGCTGTATACCAGCAACGGTACAAGAAACAATTGGAATATCAGATATTTGGCGTGGACAAGTTGGAGGACTTGTTGGAGAAAGTGAGTGATGTGGTAGTATTGCACGAGGAACCAGAAAGCAAAATGAAATTCCTGGCTGCTGTTGGTAGTTAA 1935 0.4408 MFGDRFDIEVHRLLLNSRWVRVNTDASRGLLVLLIVVGTSRPLMAGPEGVYNITHRPNPTLVFLQNYTQPTTRTTPQSRIHASEPSSDLFPHNHLNNSPFTPTNYWKFWCCSTLMANSGNKSTPTMSLDSMEQKGKNIAESNASIIQCPISQQCRSTLDGPVSILWDIENCPVPSDVRPEDVAGNIRMALQVHPVITGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVIPAGVGVSSALCNAGKFVWDWPVVARGEGFVPPSKALAPPRGGSIELSGYLMGCHINDSTDGQNEEEAIVYRGMSQSYYNSREYSVVSQSLSEYNSPHVSYLPTSLRSYSLPSGLNDVAGGPVPSSDNTECQIWVQPGDLNGLKGQIIRLLELSGGCLPLVRVPAEYQKIFGKPLFISEYGAFKLVNLFKKMDDAISVEGKGARRLVYLRNRKGGSGAPPLSLAKKDKKGKRVLEENANAVIGGCSSDELSDEERVVIEEREERSFNGKCNKGRAARCEIDGRVLEQFKCELQEILVSYSCWICLSKFEAVYQQRYKKQLEYQIFGVDKLEDLLEKVSDVVVLHEEPESKMKFLAAVGS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01945 644 ProSiteProfiles OST-type HTH domain profile. 424 498 IPR025605 -
Trre8g01945 644 CDD PIN_limkain_b1_N_like 161 287 - -
Trre8g01945 644 PANTHER LIMKAIN B LKAP 156 601 IPR024768 GO:0005777|GO:0010468
Trre8g01945 644 Pfam OST-HTH/LOTUS domain 426 492 IPR025605 -
Trre8g01945 644 Pfam OST-HTH/LOTUS domain 569 636 IPR025605 -
Trre8g01945 644 ProSiteProfiles OST-type HTH domain profile. 569 643 IPR025605 -
Trre8g01945 644 Gene3D - 162 306 - -
Trre8g01945 644 CDD LOTUS 570 636 - -
Trre8g01945 644 Pfam NYN domain 162 300 IPR021139 GO:0004540
Trre8g01945 644 Gene3D - 424 493 IPR041966 -
Trre8g01945 644 Gene3D - 566 640 IPR041966 -
Trre8g01945 644 CDD LOTUS 425 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01945 Trre-Chr8 15483580 15487423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01945 158 312 C2H2 Transcription Factor Family AT5G61190 43.871 3.30e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01945 - - gmx:100818186 855.514