Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01919 ATGAACAACTACTCTTATTCCTCCTTCTCTCCCACCTCACTCACCTCCGATCAAGAACTCTCCGTCATCGTCGCCGCCTTAACAAACGTCGTCACCGGTTCAACTTCAACAGATTTTCATCTTCCTAATTCTACCGTTGGAGCTAGCAGTAGCAGTTTAGAACGAATAGTTCCATCGGCAAACATGGAAACTTGTCGTGAATGTAACATAGCAGGATGTTTGGGATGCAATTTCTTCCCTGAAGAGAATAAGAAAAAACAGAAAAGAGCTAAGAAGAAATACAGAGGAGTTAGACAGAGACCATGGGGGAAATGGGCAGCAGAGATTCGCGATCCGAGACGCGCAACTCGTGTTTGGTTAGGAACATTTACAACTGCTGAAGAAGCTGCAAGAGCTTATGATAATGCCGCGATTGAGTTCCGTGGACCGAGGGCTAAACTCAATTTTCCTCTTGTTGATGAGTCTCTTAAGCATGCAGAGGAAGAGCCAGAAATGGTTGTTGATGATACTTCTGAGAATTTGAATCAGGAAATGCAAACAGAGACAAATGTTGGATTTGGGAATAATAATAATAATAATAATAATAATAATAACAATAATGATTTTTGGGATAAGATTGGAGAAGCTGATTTTCAACAACTTATGAGGTTTATGGATTTTGGTGGAGACTCCTCTGCTTCAAGAACAGGGAACGCTTTTAATTAG 705 0.4085 MNNYSYSSFSPTSLTSDQELSVIVAALTNVVTGSTSTDFHLPNSTVGASSSSLERIVPSANMETCRECNIAGCLGCNFFPEENKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLKHAEEEPEMVVDDTSENLNQEMQTETNVGFGNNNNNNNNNNNNNDFWDKIGEADFQQLMRFMDFGGDSSASRTGNAFN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01919 234 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Trre8g01919 234 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Trre8g01919 234 FunFam Ethylene-responsive transcription factor 2 92 151 - -
Trre8g01919 234 PANTHER DNA-BINDING DOMAIN 61 196 IPR044808 GO:0003700|GO:0009873
Trre8g01919 234 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Trre8g01919 234 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Trre8g01919 234 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Trre8g01919 234 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Trre8g01919 234 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Trre8g01919 234 CDD AP2 94 150 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01919 Trre-Chr8 15285624 15286328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01919 14 153 AP2-EREBP Transcription Factor Family AT4G34410 48.571 1.17e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g01919 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01919 - - psat:127106187 313.923