Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01891 ATGGCTCAACAAACCAACGGTGGAGATCTGAATCAGAACAACAACAGCAGCAACAACAACAACAACCAGAATCAGACACCTCAGCAGCAGCATCAGCAGCAGTGGGCGGCGGCGCAACCGCATCAGTATCAACAACAATGGATGTCTATGCAGTATCCTGCTACTGCTATGGCTATGATGCAGCAACAGATGATGATGTATCCACAGCATTACATGCCGTATGTTCATCCTCATCATTATCAACAGCTGCCTCATCAGCAACAAGTGTCTCCGCCGCCGAATCAGAGTCACCATAACCATAACCATCATCAGCAGCAGCAACAACAACATCAGTATCAGCAGAAACAAGTTTCTCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGATGAGACTTTTCTTCATAACTGTTTTGCTCATACCGGCGAGGTTGTATCGGCAAAAGTCATACGTAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTCGAGTTCTATTCGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTTAATGGTACTATGATGCCAAATACAGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGTGCTGCTGCTGGTGGTGGTGGTGGTGAAAGGCGTTCTTCTGAGGCTACTTCTGATCTCTCCGTTTTTGTGGGAGATTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAAGTGTTCGCTAGCAGATTCTCATCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCGAAAGGCTATGGCTTTGTTAGGTTTGGAGATGAAAATGAAAGGACAAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACGCCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCACAAGCTGTAGTGTTGGCTGGTGGTGGTGGACACTCATCCAATGGTGCTGTGGCCCAAGGTTCCCAATCTGACGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGGGAAGTTGTCTCTGTGAAAATTCCAATCGGTAAAGGGTGTGGCTTTGTTCAACTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGAACAGTGATTGGAAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGAATGACTCTAATGGACACTACGGCGGTCAGGGTTATGGAGGTCATGGATACGGAGGCGGCCATGGATATGCTGCTAGACAGAATCAGGATATAGCTATGCAACCTGCTGCTGCAGTTCAAGGGGCTTCCTAA 1401 0.459 MAQQTNGGDLNQNNNSSNNNNNQNQTPQQQHQQQWAAAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQLPHQQQVSPPPNQSHHNHNHHQQQQQQHQYQQKQVSPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAAGGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSSNGAVAQGSQSDGDSNNTTIFVGGLDSEISDEDLRQPFLQFGEVVSVKIPIGKGCGFVQLADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRNDSNGHYGGQGYGGHGYGGGHGYAARQNQDIAMQPAAAVQGAS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01891 466 FunFam Polyadenylate-binding protein RBP47B 210 313 - -
Trre8g01891 466 SUPERFAMILY RNA-binding domain, RBD 92 205 IPR035979 GO:0003676
Trre8g01891 466 CDD RRM1_SECp43_like 124 204 - -
Trre8g01891 466 SUPERFAMILY RNA-binding domain, RBD 221 328 IPR035979 GO:0003676
Trre8g01891 466 Gene3D - 324 452 IPR012677 -
Trre8g01891 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 409 IPR000504 GO:0003723
Trre8g01891 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 192 IPR000504 GO:0003723
Trre8g01891 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 294 IPR000504 GO:0003723
Trre8g01891 466 FunFam Polyadenylate-binding protein RBP47B 122 202 - -
Trre8g01891 466 MobiDBLite consensus disorder prediction 81 118 - -
Trre8g01891 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 302 IPR000504 GO:0003723
Trre8g01891 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 416 IPR000504 GO:0003723
Trre8g01891 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 203 IPR000504 GO:0003723
Trre8g01891 466 SMART rrm1_1 124 199 IPR000504 GO:0003723
Trre8g01891 466 SMART rrm1_1 345 412 IPR000504 GO:0003723
Trre8g01891 466 SMART rrm1_1 224 298 IPR000504 GO:0003723
Trre8g01891 466 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 107 420 - -
Trre8g01891 466 MobiDBLite consensus disorder prediction 1 38 - -
Trre8g01891 466 FunFam Polyadenylate-binding protein RBP47 326 447 - -
Trre8g01891 466 SUPERFAMILY RNA-binding domain, RBD 335 445 IPR035979 GO:0003676
Trre8g01891 466 Gene3D - 80 215 IPR012677 -
Trre8g01891 466 Gene3D - 216 316 IPR012677 -
Trre8g01891 466 CDD RRM2_SECp43_like 222 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01891 Trre-Chr8 15080263 15084521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01891 124 409 Eukaryotic Initiation Factors Gene Family AT2G36660 24.742 8.23e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01891 - - psat:127100806 656.751