Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01887 ATGGGGGGTTGCACTTCAAAGCCACAGAAACCAAACCCATATGCGCTTAGAGAAACAGAAACTGACCCAACACAAATCCCAAAGACCCCACTAAGTCCCGCCGGCGAACACCATCGTCGGAAAGATGACGTCATCGCCGGAAAAAAGTCTCCTTTTTTTCCTTTTTACAGTCCAAGTCCAGCTCGCTTCTTGAAAAAGTCTCCGTCGACGACTCCTAGCCGGAGTACTAGCTCAACGCCGAGGAGGTTTTTCCGGCGAGCTTTTCCTCCACCTTCTCCGGCGAAACATATAAGGGCTGTGTTGGCTAGGAGACAAGGGAAGAAGGAAACTGCGGCGATACCGGAAGATTCAGAGGAGGGTGGTGGTGATTTGGACAAGAGATTTGGATTCTCAAAGGATTTTAGTAGTAGGTTGGAGGTTGGAGAAGAAGTGGGTAGGGGGCATTTTGGGTATACTTGTTCTGCTAAGTTCAAGAAGGGTGAGTTTAAGGGTCAACAAGTGGCTGTAAAAGTTATCCCTAAAGCAAAGATGACAACAGCTATTGCAATTGAAGATGTTAGAAGGGAGGTGAAAATATTGCGAGCTTTGAACGGGCATAGCAATTTAGTACAATTTTATGATGCATTTGAAGACCAAGAAAACGTCTACATTGTAATGGAGTTATGTGAAGGGGGAGAGCTATTAGATATGATACTATCAAGAGGAGGGAAATATACAGAAGATGATGCAAAGGCTGTCATGGTACAAATACTAAATGTCGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAACCTGAGAATTTTTTGTACACTTCAAAGGATGAAAGTTCCGAGTTAAAAGCTATAGACTTTGGATTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATATTATGTGGCTCCTGAAGTTCTTCATAGATCTTACAGCACAGAGGCTGATGTGTGGAGTATAGGTGTCATAGCATATATTCTATTATGTGGTAGTCGTCCATTTTGGGCTCGAACAGAATCGGGTATTTTTAGGGCAGTTTTGAAGGCTGATCCAGGTTTTGACGAAGCTCCCTGGCCATCCTTATCTTCGGAAGCAAAAGATTTTGTCCAACGCCTACTGAATAAGGACCCTCGGAAGCGAATATCTGCTGCTCAGGCTCTGAGTCATCCTTGGATACGTAATTACAACGATGTAAAAGTTCCGCTTGATATCTTAATATTTAAACTCATGAAGACTTATATGAGATCATCATCATTGCGTAAGGCTGCTTTAAGGGCCATATCGAAGACATTAACTGCTGACGAGCTCTATTATCTGAGGGAACAATTTGCATTGTTGGAACCAAGCAAAAATGGGAGCATATCCTTGGAGAACATTAACAAGGCCTTGAAGAAATATGCAACAGATGCCATGAAAGAGTCTCGTATCACTGATTTTCTTTCCTCGCTGAGTTCATTACAATATAGAAGGATGGACTTTGAAGAATTTTGTGCCGCTGCATTAAGTGTGCACCAACTTGAAGTTCTTGATCGTTGGGAACAACATGCTCGTTGCGCATATGAACTTTTTGAGAAAGATGGAAACAGGGCTATTGTCATCGAAGAACTTGCTTCAGAACTTGGACTTGGTCCGTCTATTCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACCGATGGGAAGTTAAGCTTTCTCGGGTTTGTCAAATTATTGCATGGTGTATCTAGCCGAAGCCTTCCAAAGGTTCAGTTATGA 1782 0.4282 MGGCTSKPQKPNPYALRETETDPTQIPKTPLSPAGEHHRRKDDVIAGKKSPFFPFYSPSPARFLKKSPSTTPSRSTSSTPRRFFRRAFPPPSPAKHIRAVLARRQGKKETAAIPEDSEEGGGDLDKRFGFSKDFSSRLEVGEEVGRGHFGYTCSAKFKKGEFKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLVQFYDAFEDQENVYIVMELCEGGELLDMILSRGGKYTEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPGFDEAPWPSLSSEAKDFVQRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDILIFKLMKTYMRSSSLRKAALRAISKTLTADELYYLREQFALLEPSKNGSISLENINKALKKYATDAMKESRITDFLSSLSSLQYRRMDFEEFCAAALSVHQLEVLDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLPKVQL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01887 593 CDD STKc_CAMK 139 399 - -
Trre8g01887 593 Gene3D Transferase(Phosphotransferase) domain 1 227 412 - -
Trre8g01887 593 MobiDBLite consensus disorder prediction 33 47 - -
Trre8g01887 593 SMART serkin_6 138 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01887 593 Gene3D - 425 579 - -
Trre8g01887 593 Gene3D Phosphorylase Kinase; domain 1 140 226 - -
Trre8g01887 593 FunFam CDPK-related kinase 1 131 226 - -
Trre8g01887 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Trre8g01887 593 MobiDBLite consensus disorder prediction 63 82 - -
Trre8g01887 593 PANTHER SERINE/THREONINE-PROTEIN KINASE 122 567 - -
Trre8g01887 593 SUPERFAMILY EF-hand 431 581 IPR011992 -
Trre8g01887 593 FunFam CDPK-related kinase 1 436 509 - -
Trre8g01887 593 Gene3D - 418 509 - -
Trre8g01887 593 Pfam Protein kinase domain 139 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01887 593 MobiDBLite consensus disorder prediction 103 124 - -
Trre8g01887 593 ProSiteProfiles Protein kinase domain profile. 138 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01887 593 SUPERFAMILY Protein kinase-like (PK-like) 136 435 IPR011009 -
Trre8g01887 593 MobiDBLite consensus disorder prediction 1 90 - -
Trre8g01887 593 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Trre8g01887 593 FunFam CDPK-related kinase 3 130 302 - -
Trre8g01887 593 FunFam Calcium-dependent protein kinase SK5 310 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01887 Trre-Chr8 15049288 15053204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01887 1 588 EF-hand Containing Proteins AT3G50530 73.197 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre8g01887 Pkinase 3.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01887 - - gmx:100798913 1039.64