Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01877 ATGTGCTTCTTAGACATTAGCATAGGGGAAGAACTAGAAGGAAGAATATTAGTGGAGCTTTACAATGATATTGTTCCAAAAACTGCTGAGAATTTTAGAGCTCTATGCACTGGTGAGAAAGGCATTGGTCCTAATACTGGGGTTCCCCTCCATTTTAAGGGGTCTTGCTTTCATCGTATTGTTAAAGGTTGTATGATCGAAGGAGGTGATATATCTGCTGGAGACGGTACCGGAGGAGAATCTATATATGGATTCAAGTTTGAAGACGAAAATTTTGAATTGAAACATGAAAGGAAAGGGATGTTATCAATGGCAAACACCGGTCCTAATACAAATGGTTCTCAGTTTTTCATCTCTACCACCCGAACCGCTCATCTAGATGGTAAGCATGTTGTATTTGGGAAAGTAGTCAAAGGAATGGGCGTAGTCCGTTCAATTGAGCATGTTACGACCGGAGATGAGGATCGGCCTGTTCTTGATGTTAAAATCGTGGATTGTGGAGAAATTCCCGAAGGAGAAGAAGATGGTATAACTAACTTTTTCAAAGACGGCGATACTTATCCTGATTGGCCAGCAGACCTTGATGAGTGCCCTATTGAGCTTGAATGGTGGTTGAAATCTGTTGACTCAATCAAAGCTTTTGGTAATGAGTATTACAAGAAACAAGACTACAAAATGGCTCTAAGGAAGTATCGAAAGGCTTTACGTTACTTGGATATATGTTGGGAGAAGGAAGGGATCGATGAAGATAAAAGTTCAGGTTTGAGAAAAACAAAATCGCAGATATTCACTAACAGCTCCGCTTGTAAATTGAAATTAGGCGATATTAAAGGAGCATTGATGGACACAGAATTCGCAATGCGTGAAGGTAATTACAATGCCAAAGCTTTGTTCCGCCAAGGACAGGCATACATGGTACTCAATGACATTGATGCTGCAGTTGAAAGCTTTAAAAAAGCACTAACATTGGAGCCAAATGACGCTGGAATAAAAAAGGAACTCGCAGCTGCCAGAAAGAAGATATCTAATAGGACTGATCAAGAGAAAAAAGCATATAGTAAGATGTTCCAATAA 1074 0.3985 MCFLDISIGEELEGRILVELYNDIVPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRIVKGCMIEGGDISAGDGTGGESIYGFKFEDENFELKHERKGMLSMANTGPNTNGSQFFISTTRTAHLDGKHVVFGKVVKGMGVVRSIEHVTTGDEDRPVLDVKIVDCGEIPEGEEDGITNFFKDGDTYPDWPADLDECPIELEWWLKSVDSIKAFGNEYYKKQDYKMALRKYRKALRYLDICWEKEGIDEDKSSGLRKTKSQIFTNSSACKLKLGDIKGALMDTEFAMREGNYNAKALFRQGQAYMVLNDIDAAVESFKKALTLEPNDAGIKKELAAARKKISNRTDQEKKAYSKMFQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01877 357 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 167 IPR002130 GO:0000413|GO:0003755
Trre8g01877 357 FunFam Peptidyl-prolyl cis-trans isomerase D 1 174 - -
Trre8g01877 357 ProSiteProfiles TPR repeat profile. 294 327 IPR019734 GO:0005515
Trre8g01877 357 Gene3D Tetratricopeptide repeat domain 203 357 IPR011990 GO:0005515
Trre8g01877 357 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 169 - -
Trre8g01877 357 SUPERFAMILY Cyclophilin-like 2 170 IPR029000 -
Trre8g01877 357 ProSiteProfiles TPR repeat region circular profile. 294 327 - -
Trre8g01877 357 SMART tpr_5 294 327 IPR019734 GO:0005515
Trre8g01877 357 SMART tpr_5 208 241 IPR019734 GO:0005515
Trre8g01877 357 Gene3D - 1 175 IPR029000 -
Trre8g01877 357 FunFam peptidyl-prolyl cis-trans isomerase D 206 357 - -
Trre8g01877 357 Pfam Tetratricopeptide repeat 294 327 IPR001440 GO:0005515
Trre8g01877 357 SUPERFAMILY TPR-like 204 355 IPR011990 GO:0005515
Trre8g01877 357 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 3 168 IPR002130 GO:0000413|GO:0003755
Trre8g01877 357 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 IPR002130 GO:0000413|GO:0003755
Trre8g01877 357 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 143 IPR002130 GO:0000413|GO:0003755
Trre8g01877 357 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 115 IPR002130 GO:0000413|GO:0003755
Trre8g01877 357 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 20 35 IPR002130 GO:0000413|GO:0003755
Trre8g01877 357 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 57 69 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01877 Trre-Chr8 14983790 14986416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01877 10 166 U-box Gene Family AT5G67530 42.405 5.20e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01877 K05864 - gmx:100813496 660.218