Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01870 ATGGGTTGTGTTGTTCCTTCAGAACTGAGTTTAGATTTAAGACCAACTTTCGTCCCCAAAACCATCGCTAATTTCCTCTTTCACCTTTCCACCCTCCAAACTACCTCCGATAAACTCTCCAAACTCCACGATTTTCTCTCTCGATTCGAAGAAGAACTCAATAAGATCCAAGCTTTCAAACGCGAACTCCCTCTTTGCATGCTTCTCTTAATCGATGCAATTTCAGTTTTGAAAGAAGAATTGGAAAAATGTAGAACTCAGAATTCTGTTCCTGTTTTGGAAGAGTTTATTCCTTTGAAGAAAGAGATTGATCAGAGTGAAGAAAATAATAATAATGATAATAGAGAAAACAACAACAATGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTATGGAACAATAACACAACAACTAATAATAATGTTGTTGTTGATCATGATAAACATAACAATAATCATAATAAATTAGAAACTAAGAAAAGGGATGAAGAAGGACAATCTGTGACTGTAGCCGAGGAACCTTTTCAATCTTGTAGTAGTAATAGGAATGGAGGAAGTGCTTTTATGCCATTTTCAACATACTCTTCTGTTCCTGTGACAACAGTGAAACTATCAGCACCTAAAGAAGAGAAAGAAGAAACTGTTATGAATGGATTTTCTCTTCTTACCTCTGGGGTGAAAAGTTTGAGGGAAGGATTTGGTTCGAGGGGATCGAGAAGCAGTTCTAATAGGGCAGTTTCGTCTTCTCCTCCAACCGTGCAGCCGAGTTTGCGCACTCCGCCACTTCAGCCACAACAGACTTCTAGGAAACAGAGGAGATGCTGGTCGCCGGAATTGCACCGACGATTTGTTAATGCATTGCAGAAGCTCGGAGCAGCAACTCCAAAGCAAATTCGAGAACTTATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGTCTTCATACGCGGAGAGTTCCAGCTACGAGTGGTAATGAGTCTGTTGTAGTTCTTGGAGGCTTATGGATGTCTCAAGAACAATACAACGACTCTTCAAAAGGTAGCAGTACGGCATCTGGTTCTCCACAAAGTCCACTTCATTTAGCTACAGGATCTCGAGGAGCGACATCCCCAACTGAAGGTGATAGCATGGAAGATGATGAAGATGCAAAATCTGAGAGTTATAGCTGGAAAAGTCATATTCATAGACATGGAAAAGTTGGTGTATAG 1239 0.4027 MGCVVPSELSLDLRPTFVPKTIANFLFHLSTLQTTSDKLSKLHDFLSRFEEELNKIQAFKRELPLCMLLLIDAISVLKEELEKCRTQNSVPVLEEFIPLKKEIDQSEENNNNDNRENNNNECRDKKNWMSSVQLWNNNTTTNNNVVVDHDKHNNNHNKLETKKRDEEGQSVTVAEEPFQSCSSNRNGGSAFMPFSTYSSVPVTTVKLSAPKEEKEETVMNGFSLLTSGVKSLREGFGSRGSRSSSNRAVSSSPPTVQPSLRTPPLQPQQTSRKQRRCWSPELHRRFVNALQKLGAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPATSGNESVVVLGGLWMSQEQYNDSSKGSSTASGSPQSPLHLATGSRGATSPTEGDSMEDDEDAKSESYSWKSHIHRHGKVGV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01870 412 Coils Coil 149 169 - -
Trre8g01870 412 MobiDBLite consensus disorder prediction 233 278 - -
Trre8g01870 412 MobiDBLite consensus disorder prediction 237 275 - -
Trre8g01870 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 270 327 IPR017930 -
Trre8g01870 412 MobiDBLite consensus disorder prediction 350 412 - -
Trre8g01870 412 MobiDBLite consensus disorder prediction 350 382 - -
Trre8g01870 412 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 402 IPR044787 GO:0003700|GO:0006355
Trre8g01870 412 NCBIfam myb-like DNA-binding domain, SHAQKYF class 273 325 IPR006447 GO:0003677
Trre8g01870 412 MobiDBLite consensus disorder prediction 149 171 - -
Trre8g01870 412 Coils Coil 103 123 - -
Trre8g01870 412 Gene3D - 272 327 - -
Trre8g01870 412 Pfam Myb-like DNA-binding domain 275 323 IPR001005 -
Trre8g01870 412 MobiDBLite consensus disorder prediction 142 184 - -
Trre8g01870 412 FunFam Two-component response regulator 269 330 - -
Trre8g01870 412 SUPERFAMILY Homeodomain-like 270 328 IPR009057 -
Trre8g01870 412 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01870 Trre-Chr8 14930820 14933265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01870 7 360 G2-like Transcription Factor Family AT2G03500 40.374 3.93e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g01870 Myb_DNA-binding 3.9e-07 CL0123