Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01869 ATGGGTTGTGTTGTTCCTTCAGAACTGAGTTTAGATTTAAGACCAACTTTCGTCCCCAAAACCATCGCTAATTTCCTCTTTCACCTTTCCACCCTCCAAACTACCTCCGATAAACTCTCCAAACTCCACGATTTTCTCTCTCGATTCGAAGAAGAACTCAATAAGATCCAAGCTTTCAAACGCGAACTCCCTCTTTGCATGCTTCTCTTAATCGATGCAATTTCAGTTTTGAAAGAAGAATTGGAAAAATGTAGAACTCAGAATTCTGTTCCTGTTTTGGAAGAGTTTATTCCTTTGAAGAAAGAGATTGATCAGAGTGAAGAAAATAATAATAATGATAATAGAGAAAACAACAACAATGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTATGGAACAATAACACAACAACTAATAATAATGTTGTTGTTGATCATGATAAACATAACAATAATCATAATAAATTAGAAACTAAGAAAAGGGATGAAGAAGGACAATCTGTGACTGTAGCCGAGGAACCTTTTCAATCTTGTAGTAGTAATAGGAATGGAGGAAGTGCTTTTATGCCATTTTCAACATACTCTTCTGTTCCTGTGACAACAGTGAAACTATCAGCACCTAAAGAAGAGAAAGAAGAAACTGTTATGAATGGATTTTCTCTTCTTACCTCTGGGGTGAAAAGTTTGAGGGAAGGATTTGGTTCGAGGGGATCGAGAAGCAGTTCTAATAGGGCAGTTTCGTCTTCTCCTCCAACCGTGCAGCCGAGTTTGCGCACTCCGCCACTTCAGCCACAACAGACTTCTAGGAAACAGAGGAGATGCTGGTCGCCGGAATTGCACCGACGATTTGTTAATGCATTGCAGAAGCTCGGAGGTACTCAAGCAACTCCAAAGCAAATTCGAGAACTTATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGTCTTCATACGCGGAGAGTTCCAGCTACGAGTGGTAATGAGTCTGTTGTAGTTCTTGGAGGCTTATGGATGTCTCAAGAACAATACAACGACTCTTCAAAAGGTAGCAGTACGGCATCTGGTTCTCCACAAAGTCCACTTCATTTAGCTACAGGATCTCGAGGAGCGACATCCCCAACTGAAGGTGATAGCATGGAAGATGATGAAGATGCAAAATCTGAGAGTTATAGCTGGAAAAGTCATATTCATAGACATGGAAAAGTTGGTGTATAG 1245 0.4024 MGCVVPSELSLDLRPTFVPKTIANFLFHLSTLQTTSDKLSKLHDFLSRFEEELNKIQAFKRELPLCMLLLIDAISVLKEELEKCRTQNSVPVLEEFIPLKKEIDQSEENNNNDNRENNNNECRDKKNWMSSVQLWNNNTTTNNNVVVDHDKHNNNHNKLETKKRDEEGQSVTVAEEPFQSCSSNRNGGSAFMPFSTYSSVPVTTVKLSAPKEEKEETVMNGFSLLTSGVKSLREGFGSRGSRSSSNRAVSSSPPTVQPSLRTPPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGTQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPATSGNESVVVLGGLWMSQEQYNDSSKGSSTASGSPQSPLHLATGSRGATSPTEGDSMEDDEDAKSESYSWKSHIHRHGKVGV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01869 414 FunFam Myb family transcription factor 272 329 - -
Trre8g01869 414 Coils Coil 149 169 - -
Trre8g01869 414 MobiDBLite consensus disorder prediction 233 278 - -
Trre8g01869 414 MobiDBLite consensus disorder prediction 237 275 - -
Trre8g01869 414 MobiDBLite consensus disorder prediction 149 171 - -
Trre8g01869 414 Coils Coil 103 123 - -
Trre8g01869 414 Pfam Myb-like DNA-binding domain 275 325 IPR001005 -
Trre8g01869 414 NCBIfam myb-like DNA-binding domain, SHAQKYF class 273 327 IPR006447 GO:0003677
Trre8g01869 414 Gene3D - 269 331 - -
Trre8g01869 414 MobiDBLite consensus disorder prediction 142 184 - -
Trre8g01869 414 SUPERFAMILY Homeodomain-like 270 330 IPR009057 -
Trre8g01869 414 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 404 IPR044787 GO:0003700|GO:0006355
Trre8g01869 414 MobiDBLite consensus disorder prediction 352 414 - -
Trre8g01869 414 MobiDBLite consensus disorder prediction 352 384 - -
Trre8g01869 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 270 329 IPR017930 -
Trre8g01869 414 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01869 Trre-Chr8 14930820 14933265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01869 7 362 G2-like Transcription Factor Family AT2G03500 40.909 5.58e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g01869 Myb_DNA-binding 6.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01869 - - mtr:25493035 625.55