Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01868 ATGGGTTGTGTTGTTCCTTCAGAACTGAGTTTAGATTTAAGACCAACTTTCGTCCCCAAAACCATCGCTAATTTCCTCTTTCACCTTTCCACCCTCCAAACTACCTCCGATAAACTCTCCAAACTCCACGATTTTCTCTCTCGATTCGAAGAAGAACTCAATAAGATCCAAGCTTTCAAACGCGAACTCCCTCTTTGCATGCTTCTCTTAATCGATGCAATTTCAGTTTTGAAAGAAGAATTGGAAAAATGTAGAACTCAGAATTCTGTTCCTGTTTTGGAAGAGTTTATTCCTTTGAAGAAAGAGATTGATCAGAGTGAAGAAAATAATAATAATGATAATAGAGAAAACAACAACAATGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTATGGAACAATAACACAACAACTAATAATAATGTTGTTGTTGATCATGATAAACATAACAATAATCATAATAAATTAGAAACTAAGAAAAGGGATGAAGAAGGACAATCTGTGACTGTAGCCGAGGAACCTTTTCAATCTTGTAGTAGTAATAGGAATGGAGGAAGTGCTTTTATGCCATTTTCAACATACTCTTCTGTTCCTGTGACAACAGTGAAACTATCAGCACCTAAAGAAGAGAAAGAAGAAACTGTTATGAATGGATTTTCTCTTCTTACCTCTGGGGTGAAAAGTTTGAGGGAAGGATTTGGTTCGAGGGGATCGAGAAGCAGTTCTAATAGGGCAGTTTCGTCTTCTCCTCCAACCGTGCAGCCGAGTTTGCGCACTCCGCCACTTCAGCCACAACAGACTTCTAGGAAACAGAGGAGATGCTGGTCGCCGGAATTGCACCGACGATTTGTTAATGCATTGCAGAAGCTCGGAGGTACTCAAGCAGCAACTCCAAAGCAAATTCGAGAACTTATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGTCTTCATACGCGGAGAGTTCCAGCTACGAGTGGTAATGAGTCTGTTGTAGTTCTTGGAGGCTTATGGATGTCTCAAGAACAATACAACGACTCTTCAAAAGGTAGCAGTACGGCATCTGGTTCTCCACAAAGTCCACTTCATTTAGCTACAGGATCTCGAGGAGCGACATCCCCAACTGAAGGTGATAGCATGGAAGATGATGAAGATGCAAAATCTGAGAGTTATAGCTGGAAAAGTCATATTCATAGACATGGAAAAGTTGGTGTATAG 1248 0.403 MGCVVPSELSLDLRPTFVPKTIANFLFHLSTLQTTSDKLSKLHDFLSRFEEELNKIQAFKRELPLCMLLLIDAISVLKEELEKCRTQNSVPVLEEFIPLKKEIDQSEENNNNDNRENNNNECRDKKNWMSSVQLWNNNTTTNNNVVVDHDKHNNNHNKLETKKRDEEGQSVTVAEEPFQSCSSNRNGGSAFMPFSTYSSVPVTTVKLSAPKEEKEETVMNGFSLLTSGVKSLREGFGSRGSRSSSNRAVSSSPPTVQPSLRTPPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGTQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPATSGNESVVVLGGLWMSQEQYNDSSKGSSTASGSPQSPLHLATGSRGATSPTEGDSMEDDEDAKSESYSWKSHIHRHGKVGV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01868 415 Coils Coil 149 169 - -
Trre8g01868 415 MobiDBLite consensus disorder prediction 233 278 - -
Trre8g01868 415 MobiDBLite consensus disorder prediction 353 415 - -
Trre8g01868 415 MobiDBLite consensus disorder prediction 237 275 - -
Trre8g01868 415 MobiDBLite consensus disorder prediction 353 385 - -
Trre8g01868 415 SUPERFAMILY Homeodomain-like 270 331 IPR009057 -
Trre8g01868 415 FunFam Myb family transcription factor 272 330 - -
Trre8g01868 415 MobiDBLite consensus disorder prediction 149 171 - -
Trre8g01868 415 Coils Coil 103 123 - -
Trre8g01868 415 NCBIfam myb-like DNA-binding domain, SHAQKYF class 273 328 IPR006447 GO:0003677
Trre8g01868 415 MobiDBLite consensus disorder prediction 142 184 - -
Trre8g01868 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 405 IPR044787 GO:0003700|GO:0006355
Trre8g01868 415 Gene3D - 272 330 - -
Trre8g01868 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 270 330 IPR017930 -
Trre8g01868 415 Pfam Myb-like DNA-binding domain 275 326 IPR001005 -
Trre8g01868 415 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01868 Trre-Chr8 14930820 14933265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01868 7 363 G2-like Transcription Factor Family AT2G03500 40.909 9.16e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g01868 Myb_DNA-binding 9.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01868 - - mtr:25493035 620.928