Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01857 ATGGAGCAACAAGGCCATAGAAACAGAAATGGTATGATTCCTTATCATCTCATTCCTGGTATTCTACATCTGGGTCATGGTGGAAATCAACCTAGGATGATGAGTACCCAAGAGGCTCATGCTTATGTCCTAGATCACCACTTTATTCTCAATCAACATAACATCAATCCGGTTTTCAGACACAATGTTGATAGAATTAGAAATCAACCTAGGGTAAGTACCCAACATGCCTCGGTGGCTTACCATGTCCAAGATGGCCATTTTATTCTTCATGAAAATATCGGTCAGGTGAACCGCCAAGCTCCCACAAGAGGAAACATTGGAGCTACCAGAAGACGGTATAATACCGATGTTGATAGAAATCAACCTAGGGTGAGTACCCAAGATGCCTCCTCGTCGGCTTATGCTTATAATGTCCAAGATGGCCACTTTATTCTTCATGAAAACATCGGTCAGGTGAACCAACAAGTTCCGACAAGAAGAAGCGACATTGGAGGAGGTACCCGGAAACAGTTTGAAGCCACTCTTGAGAAAGTTATAATTCAACAAGTACCGACAGATTCTGAAGCTATGACATGTTCCATTTGTCTTGTGGAGTTTTCGGTTGGGTTGGAAGCTATTCGATTGCCTAGTCCGTGTTCGCATGTCTATCACAAAGATTGTATTCTCGAGTGGTTGGATAGATCTAGCACATGCCCTTTGTGTCGTAGGCCTGTTTTGTAA 723 0.4302 MEQQGHRNRNGMIPYHLIPGILHLGHGGNQPRMMSTQEAHAYVLDHHFILNQHNINPVFRHNVDRIRNQPRVSTQHASVAYHVQDGHFILHENIGQVNRQAPTRGNIGATRRRYNTDVDRNQPRVSTQDASSSAYAYNVQDGHFILHENIGQVNQQVPTRRSDIGGGTRKQFEATLEKVIIQQVPTDSEAMTCSICLVEFSVGLEAIRLPSPCSHVYHKDCILEWLDRSSTCPLCRRPVL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01857 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 240 IPR013083 -
Trre8g01857 240 Pfam Ring finger domain 192 236 IPR001841 -
Trre8g01857 240 SMART ring_2 193 235 IPR001841 -
Trre8g01857 240 ProSiteProfiles Zinc finger RING-type profile. 193 236 IPR001841 -
Trre8g01857 240 SUPERFAMILY RING/U-box 181 239 - -
Trre8g01857 240 SMART ringv_2 192 236 IPR011016 GO:0008270
Trre8g01857 240 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 81 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01857 Trre-Chr8 14784991 14785713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01857 190 236 C3H Transcription Factor Family AT5G54990 51.064 3.30e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01857 - K22378 tpra:123917723 265.003