Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01848 ATGATAGCCAGCTCCTTCAACAATGCTGATTCTATGTTTTCAAATGAAGAAGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGCCTTTGTTCTGTTGATCAAAGCAATTATAATTCTATTGCTTCTAAAAAGCAAAAGCCTGATTTATCGATCAGCACTAAGGATAGGAAGGAAAAGCTTGGTGAACGAATTGTTGCTCTTCAACAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGACTACATAGAGTTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCTTATCTCGAAGCTTCACCACCCACCCAAATGCAGGGTACAGAGTCATGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTCTCATTTACTATTGGAGTTGCCGAGGGCAATGGTGCAGACATCTGGGCACCAATCAAGACCACTTCACCTAAACATGAGAAAGATGTCTCGCAATCGTAA 498 0.4157 MIASSFNNADSMFSNEEGIDVRKMMGHKRSLCSVDQSNYNSIASKKQKPDLSISTKDRKEKLGERIVALQQLVSPYGKTDTSSVLKEAMDYIEFLHKQVKLLSAPYLEASPPTQMQGTESCSLRSRGLCLVPVSFTIGVAEGNGADIWAPIKTTSPKHEKDVSQS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01848 165 Gene3D - 44 111 IPR036638 GO:0046983
Trre8g01848 165 FunFam Transcription factor bHLH113 family 45 121 - -
Trre8g01848 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Trre8g01848 165 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 136 - -
Trre8g01848 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 113 IPR036638 GO:0046983
Trre8g01848 165 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Trre8g01848 165 SMART finulus 52 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01848 Trre-Chr8 14690798 14694768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01848 24 165 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 57.746 1.32e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01848 - - gmx:100809747 275.018