Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01847 ATGATAGCCAGCTCCTTCAACAATGCTGATTCTATGTTTTCAAATGAAGAAGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGCCTTTGTTCTGTTGATCAAAGCAATTATAATTCTATTGCTTCTAAAAAGCAAAAGCCTGATTTATCGATCAGCACTAAGGATAGGAAGGAAAAGCTTGGTGAACGAATTGTTGCTCTTCAACAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGACTACATAGAGTTCCTTCATAAACAACTGCTCAGTGCTCCTTATCTCGAAGCTTCACCACCCACCCAAATGCAGGGTACAGAGTCATGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTCTCATTTACTATTGGAGTTGCCGAGGGCAATGGTGCAGACATCTGGGCACCAATCAAGACCACTTCACCTAAACATGAGAAAGATGTCTCGCAATCGTAA 492 0.4167 MIASSFNNADSMFSNEEGIDVRKMMGHKRSLCSVDQSNYNSIASKKQKPDLSISTKDRKEKLGERIVALQQLVSPYGKTDTSSVLKEAMDYIEFLHKQLLSAPYLEASPPTQMQGTESCSLRSRGLCLVPVSFTIGVAEGNGADIWAPIKTTSPKHEKDVSQS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01847 163 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 134 - -
Trre8g01847 163 FunFam Transcription factor bHLH113 family 45 119 - -
Trre8g01847 163 CDD bHLH_AtbHLH_like 52 99 IPR045239 -
Trre8g01847 163 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Trre8g01847 163 Gene3D - 44 106 IPR036638 GO:0046983
Trre8g01847 163 SMART finulus 52 101 IPR011598 GO:0046983
Trre8g01847 163 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 102 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01847 Trre-Chr8 14690798 14694768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01847 24 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 56.338 2.93e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01847 - - gmx:100809747 266.544