Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01817 ATGGGTGGTTACACCTTTTATGACAAAATTTCTTCATCTGGGTATGATGATTTAGGCTTGTTGAATCAATCTTTGCATAACTTTGGAGCTTCTAATGGTGTTTCAAGAGATGGGTTTTCACCATCATCAAATTTAGAGAGTGAGAAGGAAAAGGTGGTGAAGTGTTCTGTAACTGAGGCTAAAGCTTTAGCTGCTTTGAAGAACCATAGTGAAGCAGAGAAGAGAAGGAGGGAGAGAATAAATGGTCATCTTGCAACATTGCGTGGTCTTGTGTCTTCCACTGATCAAAAGATGGACAAAGCCACATTACTTGCTAAAGTGGTTAACCAAGTGAAGGAATTGAAGAAGAATGCAATGGAAGCAAGTAAAGGTTTTCTCATTCCAATGGAATATGATGAAGTGAAAGTTGAACCATATGATATTGAATTAGGATATGGATGCATGTCTTACAAAGCAACTATATGCTGTGATTACCAACCTGAGATACTATCTTACCTCAAAAAAGCACTTGATACACTTCAACTTCAACTAGTGAAAGTAGAAATGTCAACATTGGAAAACAGGATGAAGAATGTGTTTGTCTTTACATGTTGCAAAGGGGATAATAGTGTTAATGTTGAAGCATGTCAAAGTATTGCACATGTTGTTCATAAAGCACTAGATTCTGTGTTGGAAAAGGCTTACAACTCAATGGAGTTTTCACTCAAAACTTCATATCCAAACAAGAGGAGAAGAATGTGCTTTGCTGAAACATCCACTTCCTCATGCGACCATGGATCTTGTTGCTCATGCTAA 795 0.3748 MGGYTFYDKISSSGYDDLGLLNQSLHNFGASNGVSRDGFSPSSNLESEKEKVVKCSVTEAKALAALKNHSEAEKRRRERINGHLATLRGLVSSTDQKMDKATLLAKVVNQVKELKKNAMEASKGFLIPMEYDEVKVEPYDIELGYGCMSYKATICCDYQPEILSYLKKALDTLQLQLVKVEMSTLENRMKNVFVFTCCKGDNSVNVEACQSIAHVVHKALDSVLEKAYNSMEFSLKTSYPNKRRRMCFAETSTSSCDHGSCCSC 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01817 264 SMART finulus 70 120 IPR011598 GO:0046983
Trre8g01817 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 116 IPR036638 GO:0046983
Trre8g01817 264 CDD bHLH_AtAIG1_like 59 138 - -
Trre8g01817 264 Gene3D - 60 123 IPR036638 GO:0046983
Trre8g01817 264 PANTHER TRANSCRIPTION FACTOR BHLH30 45 248 IPR045847 GO:0003700|GO:0006355
Trre8g01817 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 114 IPR011598 GO:0046983
Trre8g01817 264 Pfam Helix-loop-helix DNA-binding domain 68 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01817 Trre-Chr8 14457304 14459971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01817 61 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.060 5.87e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g01817 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01817 - - psat:127107084 348.206