Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01815 ATGGATTTCTCCAAAAAGCGCAAAACTGAAGAGAACGGCGACGCCAATTCTCCTCCTCCTTCAACCGACTCCGACGTAACCACCACCCCTCTCACCTCCGAAGACATCCGCAAAATTCTCCAACCTTTCACTCAAGAACAACTACTAGACCTTCTCCAATCAGCCTCTCTTCAACACCCTAACGTTCTCGACGCCGTACGTTCCGTCGCCGACCGTGATACCACTCGTCGTAAACTCTTCGTCCGTGGTCTCTCAGGCGAAACCACCACCGACACACTCAGTTCAATTTTCTCTTCTTACGGTGAACTAGACGAAGCCATCGTGATATTCGATAAGAACACTGGTAGGTCTAAGGGATACGGTTTCGTTGTGTTCAAACACGTTGATGGTGCTATTCTCGCTTTAAAAGAACCAAGCAAGAAAATCGATGGAAGAATGACGGTGACTCAGCTTGCGGCGGCGGGTTCTGGTTCTACCGGCGGCGATGTTTCTGCTCGTAAGGTATTTGTAGGTAATGTTCCGTTTGAATTATCAGCAGAGAGTTTATTGAGTGAGTTTTCTAAGTATGGTGAAATTGAAGAGGGTCCATTAGGGTTTGATAAAGCGAGTGGTAAAACGAGAGGTTTTGCTTTTTTTGTTTACAAAACAGAAGAAGGTGCTAGAGCTTCACTTGTTGAATCTAACAAAATTGTTGATGGTCATCAAGTAATTTGTAAGTTGGCTGTTGATAACAAAAAGCCCAAGCCTGGAGCCCAAAACCCATCGGGCTATCCAGTTGACAACTCTAATACTAATTATCATGCTCCTAATCCTACGATGATGCCGCAGTACGGTGCTCCTCCTAATAGTTATGGGCAGCCTTATAGTAATCAGGTTCCTTCTGCTGGTGGGTATGGGCCTGGAATTGGTGGGGGTGCACCTCAGTATGGTGGGCCTGTTGCTGGACCTGGACCTGTTTCTGGTCAAAGAGCACCTCCTCCTTCTGTTGGTGGATATTCTGATGGTTCGCAGCGTGCCGCCGCCTTATTATTGAGGTGTTTCATTCAGCTTTGTGATGGCTTCTTGGGCGCTAGTGCTTTAAATGGTTGTGCTGATTTCGTGCATGCAGACAATGAAATTTTTGGTCTTGGTTACATGGAATGCTGTAATTTGTTGCTGCTTCACTACCTCTGCTTCTTTGTGTTATGGTGCTATTTGCTCTAG 1203 0.4622 MDFSKKRKTEENGDANSPPPSTDSDVTTTPLTSEDIRKILQPFTQEQLLDLLQSASLQHPNVLDAVRSVADRDTTRRKLFVRGLSGETTTDTLSSIFSSYGELDEAIVIFDKNTGRSKGYGFVVFKHVDGAILALKEPSKKIDGRMTVTQLAAAGSGSTGGDVSARKVFVGNVPFELSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARASLVESNKIVDGHQVICKLAVDNKKPKPGAQNPSGYPVDNSNTNYHAPNPTMMPQYGAPPNSYGQPYSNQVPSAGGYGPGIGGGAPQYGGPVAGPGPVSGQRAPPPSVGGYSDGSQRAAALLLRCFIQLCDGFLGASALNGCADFVHADNEIFGLGYMECCNLLLLHYLCFFVLWCYLL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01815 400 SUPERFAMILY RNA-binding domain, RBD 163 261 IPR035979 GO:0003676
Trre8g01815 400 MobiDBLite consensus disorder prediction 1 29 - -
Trre8g01815 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
Trre8g01815 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Trre8g01815 400 PANTHER GEO13361P1-RELATED 58 303 - -
Trre8g01815 400 SUPERFAMILY RNA-binding domain, RBD 67 152 IPR035979 GO:0003676
Trre8g01815 400 MobiDBLite consensus disorder prediction 313 332 - -
Trre8g01815 400 Gene3D - 163 267 IPR012677 -
Trre8g01815 400 FunFam UBP1-associated protein 2C isoform A 60 161 - -
Trre8g01815 400 SMART rrm1_1 78 150 IPR000504 GO:0003723
Trre8g01815 400 SMART rrm1_1 167 239 IPR000504 GO:0003723
Trre8g01815 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Trre8g01815 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 234 IPR000504 GO:0003723
Trre8g01815 400 Gene3D - 34 162 IPR012677 -
Trre8g01815 400 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01815 Trre-Chr8 14450759 14452516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01815 149 337 C2H2 Transcription Factor Family AT2G19380 28.251 1.20e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01815 K12741 - gmx:100804230 390.578