Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre8g01815 | ATGGATTTCTCCAAAAAGCGCAAAACTGAAGAGAACGGCGACGCCAATTCTCCTCCTCCTTCAACCGACTCCGACGTAACCACCACCCCTCTCACCTCCGAAGACATCCGCAAAATTCTCCAACCTTTCACTCAAGAACAACTACTAGACCTTCTCCAATCAGCCTCTCTTCAACACCCTAACGTTCTCGACGCCGTACGTTCCGTCGCCGACCGTGATACCACTCGTCGTAAACTCTTCGTCCGTGGTCTCTCAGGCGAAACCACCACCGACACACTCAGTTCAATTTTCTCTTCTTACGGTGAACTAGACGAAGCCATCGTGATATTCGATAAGAACACTGGTAGGTCTAAGGGATACGGTTTCGTTGTGTTCAAACACGTTGATGGTGCTATTCTCGCTTTAAAAGAACCAAGCAAGAAAATCGATGGAAGAATGACGGTGACTCAGCTTGCGGCGGCGGGTTCTGGTTCTACCGGCGGCGATGTTTCTGCTCGTAAGGTATTTGTAGGTAATGTTCCGTTTGAATTATCAGCAGAGAGTTTATTGAGTGAGTTTTCTAAGTATGGTGAAATTGAAGAGGGTCCATTAGGGTTTGATAAAGCGAGTGGTAAAACGAGAGGTTTTGCTTTTTTTGTTTACAAAACAGAAGAAGGTGCTAGAGCTTCACTTGTTGAATCTAACAAAATTGTTGATGGTCATCAAGTAATTTGTAAGTTGGCTGTTGATAACAAAAAGCCCAAGCCTGGAGCCCAAAACCCATCGGGCTATCCAGTTGACAACTCTAATACTAATTATCATGCTCCTAATCCTACGATGATGCCGCAGTACGGTGCTCCTCCTAATAGTTATGGGCAGCCTTATAGTAATCAGGTTCCTTCTGCTGGTGGGTATGGGCCTGGAATTGGTGGGGGTGCACCTCAGTATGGTGGGCCTGTTGCTGGACCTGGACCTGTTTCTGGTCAAAGAGCACCTCCTCCTTCTGTTGGTGGATATTCTGATGGTTCGCAGCGTGCCGCCGCCTTATTATTGAGGTGTTTCATTCAGCTTTGTGATGGCTTCTTGGGCGCTAGTGCTTTAAATGGTTGTGCTGATTTCGTGCATGCAGACAATGAAATTTTTGGTCTTGGTTACATGGAATGCTGTAATTTGTTGCTGCTTCACTACCTCTGCTTCTTTGTGTTATGGTGCTATTTGCTCTAG | 1203 | 0.4622 | MDFSKKRKTEENGDANSPPPSTDSDVTTTPLTSEDIRKILQPFTQEQLLDLLQSASLQHPNVLDAVRSVADRDTTRRKLFVRGLSGETTTDTLSSIFSSYGELDEAIVIFDKNTGRSKGYGFVVFKHVDGAILALKEPSKKIDGRMTVTQLAAAGSGSTGGDVSARKVFVGNVPFELSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARASLVESNKIVDGHQVICKLAVDNKKPKPGAQNPSGYPVDNSNTNYHAPNPTMMPQYGAPPNSYGQPYSNQVPSAGGYGPGIGGGAPQYGGPVAGPGPVSGQRAPPPSVGGYSDGSQRAAALLLRCFIQLCDGFLGASALNGCADFVHADNEIFGLGYMECCNLLLLHYLCFFVLWCYLL | 400 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre8g01815 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 163 | 261 | IPR035979 | GO:0003676 | |
Trre8g01815 | 400 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Trre8g01815 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 166 | 243 | IPR000504 | GO:0003723 | |
Trre8g01815 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 77 | 154 | IPR000504 | GO:0003723 | |
Trre8g01815 | 400 | PANTHER | GEO13361P1-RELATED | 58 | 303 | - | - | |
Trre8g01815 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 67 | 152 | IPR035979 | GO:0003676 | |
Trre8g01815 | 400 | MobiDBLite | consensus disorder prediction | 313 | 332 | - | - | |
Trre8g01815 | 400 | Gene3D | - | 163 | 267 | IPR012677 | - | |
Trre8g01815 | 400 | FunFam | UBP1-associated protein 2C isoform A | 60 | 161 | - | - | |
Trre8g01815 | 400 | SMART | rrm1_1 | 78 | 150 | IPR000504 | GO:0003723 | |
Trre8g01815 | 400 | SMART | rrm1_1 | 167 | 239 | IPR000504 | GO:0003723 | |
Trre8g01815 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 79 | 145 | IPR000504 | GO:0003723 | |
Trre8g01815 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 168 | 234 | IPR000504 | GO:0003723 | |
Trre8g01815 | 400 | Gene3D | - | 34 | 162 | IPR012677 | - | |
Trre8g01815 | 400 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre8g01815 | Trre-Chr8 | 14450759 | 14452516 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre8g01815 | 149 | 337 | C2H2 Transcription Factor Family | AT2G19380 | 28.251 | 1.20e-14 | 73.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre8g01815 | K12741 | - | gmx:100804230 | 390.578 |