Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01798 ATGCATTTTTTTCCTTTCATTAGTCTTCTAACACAAGCAAGAACTTGGTTCTCCTTTTTATTAATCTCCTTGGTTTACATCAATGGCTACAAAGCTGAGGTTAGAATTGGAGACACCAAAGTTATACCTATAGGTGCAATAATTGATGTTAATTCTCGAGTCGGGAAAGAACAAAGAGTAGCCATGGATATTGCTGCTCAAAATTACAATAACATTTCAAATACCTTCAAACTTGCTCTATATTTTCAGGAACCAACCATGGATTCCTTCAAAGCCACTTCTCTTGCTGAAGATATGATTAAAAAGCAGAAGGTGGAAGTGATTGTAGGAATGCAGACATGGACAGAAGCAGCTTCAATAGCTGAATTAATACATGAAGCTCAAGTTAATATTCCTCTTATATCCTTTGTAGCACCTGCAATTACTCCGCCATTGATGGAGATTCGGTGGCCGTCTTTGGTGAGACTTGCTAACAATGGAACAGCATATGTGAAATGTATTGCTGATTTGGTTCATGTTTACAATTGGCATAGTGTGGTAGCCATCTATGAAGATGATGCCTATGGTGGTGATTCTGGGATGTTAGCACTGCTATCCGAGGCTCTCCAAGATGTTGGCTCGATGATTGAATATCGTTTAGCTTTGCCGTCATTAGCATATCTACCAAATCCGGGAGAGTTTATTCGTAAAGAGTTGTTTAAGATAACAGAAAACACGCAATCTCGAGTATTCATTGTATTGCAATCATCATTAGAAATGGGGATTCATTTGTTTAAGGAAGCTTCACAAATGGGACTAGTGGATAGAGATTCGGCTTGGATGATCCCCGAGAGCATAACTAATTTGTTGGATTCTATCAATAAGTCAAGTATTTCTTATATGGAGGGAGCTTTAGGAATCAAAACCTACTACTCAGAAAACAGCAAGGACTATACAAAATTTGAGGCTCAGTTCAGAAGAGCTTTTCGTGACAAAAATCCCGAGGAAGATAACCGCGACCCGGGATTTTATGCTTTGCAAGCATATGATAGCATTCAAATGATTGGAAATGCAATAGACAAGATATCTAGTGACAAAAAAACTTTACTACAAGAAATAGTGTCCAGCAATTTTCTTGGTCTAAGCGGAAAAATTAAATTTGAATCAGAACAGCTTTTGCAGAATCCTACCTTGAGGATTGTAAATGTAGATGGGAAGAGTTACAGAGAATTAGACTTGTGGAATCTTGAAAATGGATTCTTCACTAACATCTCGACAAAAGAAGGTAAAAATGGTGCTTCTAGGAACTCAGAAAGTTTAACCGGTTCAGTAATTTGGCCAGGGAAGTTGCTTACAGTTCCAAAGGGATGGAACTTACCTACTAAACAAAAGCCATTGAGAATTGCAGTCCCTGGAAGAACTGCATTTTCCAAATTTGTCAAGGTTGATTACGATGCGCGAGGAAATCCAAAATATAGTGGATTTTGCATTGAAATTTTTGACAAGGCGTTGGAAGTTTTAGGGTATGATCTTCCTTATGAATATCATCCTATCAATGGAACATATCCTGATCTTGTTCAACTTGTTTATAACAAGACTTATGACGGTGTTGTTGGCGATATGACCATACTGGCAGAGAGAATGGAATATGTAGATTTTACCGTACCATATGCAGAATCAGGATTGTCGATGATAGTTACAGAAAAGTCACAAGAATCCGCATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGCGGTAACGGGTGCCATCTTGATTTATACAATGTTAGTAGTATGGTACCTGGAGAAAGAAGACAATGAAGAGTTTCAAGGCAATTGGAAAAACCAAATCAGCACTTCTTTTTGGTTTACTTTCTCATCACTATTCTTTGCTCATAGGGAGAAAATGCATAGCAATTTATCTCGTGTAGTGATGGTATCGTGGTTGTTTCTAGTTTTGATTCTTAATTCAAGCTACACTGCGAGTCTTTCTTCGATGCTCACAGTTCAACAACTGCATGCAAATGTCACAGACATTGAGTGGCTGAAGAAGAACGACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGAAATACCTAGAGGAAGTCGAAAAATTCAAACCAGGGAACATCGTCAACATTAGTAATGAAAACAATTATGACCCTGAATTCAAAAATTCCTCAATTGCAGCAGCTTTTCTCGAACTCCCTTATGAGAAAGTATACATCAGTAAATACTGCAAGGGGTACTCTGCTTCTACACCTACCACCAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGATCCCCCTTGGTCAGAGATGTTTCTAAAGCTATTTTGGAGCTCTTACAAAAGGGAGAATTGAAGAAATTAGAAGATATATGGTTGAATCCCACAAATGTGTGCTCCAACAATTTGAATTCCAAGAATACAGAAAGTTTGAAGCTAGGAAGTTTCTGGATTCTCTATGTGATTTCTGGTGCCACATCTACTATTTGTTTTCTAGTTTCTACTATCCATTCCCTGAGATCTAGACAAACAGTAAATGATGATGCACAAGAAAGTAGAGGCACCCAAAATGATGTGAGCAGATGGAAAAGGGTGGTTAAATTAAGTAGGAAAATTTGTAGCAGAAAGCATAATAAAACAAGCAAGGTAAATGAAGATGTTACTGATTCTCCTTCCAGTACCCCTGAGCATGAGCAGGGAATGGGTCATCAATTACCAGAAATCATAACAGTCTCTTCACCACCAACAGAGTTGTAA 2757 0.3816 MHFFPFISLLTQARTWFSFLLISLVYINGYKAEVRIGDTKVIPIGAIIDVNSRVGKEQRVAMDIAAQNYNNISNTFKLALYFQEPTMDSFKATSLAEDMIKKQKVEVIVGMQTWTEAASIAELIHEAQVNIPLISFVAPAITPPLMEIRWPSLVRLANNGTAYVKCIADLVHVYNWHSVVAIYEDDAYGGDSGMLALLSEALQDVGSMIEYRLALPSLAYLPNPGEFIRKELFKITENTQSRVFIVLQSSLEMGIHLFKEASQMGLVDRDSAWMIPESITNLLDSINKSSISYMEGALGIKTYYSENSKDYTKFEAQFRRAFRDKNPEEDNRDPGFYALQAYDSIQMIGNAIDKISSDKKTLLQEIVSSNFLGLSGKIKFESEQLLQNPTLRIVNVDGKSYRELDLWNLENGFFTNISTKEGKNGASRNSESLTGSVIWPGKLLTVPKGWNLPTKQKPLRIAVPGRTAFSKFVKVDYDARGNPKYSGFCIEIFDKALEVLGYDLPYEYHPINGTYPDLVQLVYNKTYDGVVGDMTILAERMEYVDFTVPYAESGLSMIVTEKSQESAWMFMKPFTWQMWAVTGAILIYTMLVVWYLEKEDNEEFQGNWKNQISTSFWFTFSSLFFAHREKMHSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLHANVTDIEWLKKNDMKIGCDGDSFVRKYLEEVEKFKPGNIVNISNENNYDPEFKNSSIAAAFLELPYEKVYISKYCKGYSASTPTTRFGGLGFMFQKGSPLVRDVSKAILELLQKGELKKLEDIWLNPTNVCSNNLNSKNTESLKLGSFWILYVISGATSTICFLVSTIHSLRSRQTVNDDAQESRGTQNDVSRWKRVVKLSRKICSRKHNKTSKVNEDVTDSPSSTPEHEQGMGHQLPEIITVSSPPTEL 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01798 918 Gene3D - 740 801 - -
Trre8g01798 918 Gene3D - 167 332 - -
Trre8g01798 918 FunFam Glutamate receptor 567 705 - -
Trre8g01798 918 Pfam Bacterial extracellular solute-binding proteins, family 3 482 794 IPR001638 -
Trre8g01798 918 Pfam Receptor family ligand binding region 61 398 IPR001828 -
Trre8g01798 918 CDD GluR_Plant 457 793 - -
Trre8g01798 918 PIRSF IGluLR_plant 10 908 IPR017103 -
Trre8g01798 918 MobiDBLite consensus disorder prediction 885 899 - -
Trre8g01798 918 CDD PBP1_GABAb_receptor_plant 44 417 IPR044440 -
Trre8g01798 918 Gene3D - 336 458 - -
Trre8g01798 918 MobiDBLite consensus disorder prediction 877 918 - -
Trre8g01798 918 Pfam Ligand-gated ion channel 795 824 IPR001320 GO:0015276|GO:0016020
Trre8g01798 918 FunFam Glutamate receptor 163 332 - -
Trre8g01798 918 SMART GluR_14 458 795 IPR001320 GO:0015276|GO:0016020
Trre8g01798 918 FunFam Glutamate receptor 458 568 - -
Trre8g01798 918 SUPERFAMILY Periplasmic binding protein-like II 435 794 - -
Trre8g01798 918 Gene3D - 459 566 - -
Trre8g01798 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 857 IPR015683 -
Trre8g01798 918 Gene3D - 37 166 - -
Trre8g01798 918 Gene3D - 567 700 - -
Trre8g01798 918 SUPERFAMILY Periplasmic binding protein-like I 40 450 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01798 Trre-Chr8 14328206 14331692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01798 16 854 Ion Channels AT2G29120 34.096 1.56e-145 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01798 - - gmx:100780320 1254.97