Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01780 ATGTCATCAGATGCTTGGAGTGTGTATCCTAAATCACTTTGTCGGAATCGCTTCGTCTTGCATCTCCAGAATCGCTTCTCGGAATCGCTTTCTCTCAGCACCTTTGATTCGTCCGAATCTCTTCCTCACATCATCTCAGAATCACATCCTAATTCACTCAAAATCGCTTTCTCGCACCAATTGGCTTCATCTGAATCGCTTCCCCAAAACCTAGAGACTATTAAGTTACTTCTCGCGCCTATTTTCTCTAATCTGGTATCGAGGCATAAAAAGGGGGCACAAATATTGTCTGCTTTAAATGTTTTCTTGATTATAGGAATTGGAAATGAAGAGAAGATAAAGGAAAGATCACAACTAGCTTATGAGAGAAAGAAGCTGGTCAATAAATTGAAGGCGAAAGTGGAGAAGATTGTGGACGAGAAGCTTGGTTCCCAATTTGAAGTTGGTGTTTCTTGGAAGACATATTCAATATATCACAATAATGTCACAAAATTAATTAAGATTTGCGATGTTGAAGATGAGAAGTCAAATAGGGTACAATATGAAGGTCCTGACCCTAAATTGGCCGAAATGCTTGAAAGGGATGTGTTAGAAACCTCCTGGAGTGAGATGTTTATCCTAGATTGTGTCCAATTCATTAAGCAACAGAGGGCTTCTGGAGTGCATGAATCATCTAAAAGGGTCAAGTCCGAACTTCTTGTTCAGGTCAATGGTGTATGCAATAGCGCAACAAATGAAAATGGCAGCTCAAAACTAGTAATGGTCTTGGATGTTACTAACTTCCCATGCGACATTGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCACTTCCAAATTTTGAGAGTCGTAAAGAGTTGATTCGGATAAGTTTGAAAACTGTTGAGGTGAAAACTTCATTCTTGGATTAG 921 0.3941 MSSDAWSVYPKSLCRNRFVLHLQNRFSESLSLSTFDSSESLPHIISESHPNSLKIAFSHQLASSESLPQNLETIKLLLAPIFSNLVSRHKKGAQILSALNVFLIIGIGNEEKIKERSQLAYERKKLVNKLKAKVEKIVDEKLGSQFEVGVSWKTYSIYHNNVTKLIKICDVEDEKSNRVQYEGPDPKLAEMLERDVLETSWSEMFILDCVQFIKQQRASGVHESSKRVKSELLVQVNGVCNSATNENGSSKLVMVLDVTNFPCDIDEALRRRLEKRIYIPLPNFESRKELIRISLKTVEVKTSFLD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01780 306 Gene3D - 207 282 IPR027417 -
Trre8g01780 306 Pfam ATPase family associated with various cellular activities (AAA) 203 281 IPR003959 GO:0005524|GO:0016887
Trre8g01780 306 Gene3D - 109 152 - -
Trre8g01780 306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 299 IPR027417 -
Trre8g01780 306 PANTHER AAA DOMAIN-CONTAINING 208 299 - -
Trre8g01780 306 Gene3D - 283 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01780 Trre-Chr8 14127468 14131869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01780 110 148 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 61.538 4.04e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01780 K07767 - gmx:100787634 141.739