Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01744 ATGTTAGATCTTAATCTAAACGATGAAAACTCGACCGATTCGACTCAGAACATTAACTCACCAATGATTTCGGAGAATTTTCCCCAAACTTCATGGAATCAAATGGTGGAATCAGGAACATCGAATTCCTCAATAGTCAATGCGGACGGTTCAAGCAACAACGCAAACGATGAGGACTCATGTTCCACGCGCGTTGATGATGTTTTCACTTTCAGTTTCGATATTCTTAAAATGGAAGGTTCAAACGACGTCGTAACGAAGGAGTTTTTTCCTGTGAATGGAGGAGGTGATGATGAAGGTTGGTGTAATAATTGGAAGTTACAAGCTACATCGTCGTTTCCGGCGAAGAATAGTTCCATTGATCTATCGTTTAATCAGAATGAAGAGATGAAGATTGTTCAGCCTCAACAACAAGCTAAGAAAAGTAGAAGAGGACCAAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGAACTGGAAGATGGGAATCACATATCTGGGATTGCGGGAAACAAGTCTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGGTGCTGACATAAATTTTAATCTGAATGATTATGAGGATGATCTTAAACAGACGAAGAATTTATCCAAAGAGGAATTCGTGCACATACTTCGCCGTCACAGTACTGGTTTTTCAAGAGGGAGTTCAAAATACCGCGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTATCATTAACAACGGAAGGGAAGCAGTGACTAATTTTGAGCCCAGTTCATACCAAGGAGAGATGAATCCTGCAGCCACCAATGAAGGTGGCAGTCAAAATCTTGATCTCAATTTGGGCATAGCCACACCAGGACATGGTCCCAAAGAAAATTCAGGGAAATTTCACTCCCCTTCTGTCCCTTACACAAGTTCAAGGATGGAAACCAATGTTTTAGGAACCGGTAATCCATCTTTGAAAAGGCTATTAGTAACTGAAGAGCGTCATTCTCTATGGAATGACATGTATCCCGCTTTCTTTCCCAATGAGGAAAGAGCAGATAGTATCGGCAAAGATCCTTCAAAAGGACTCCCCAATAGGGCGTGGCAACCTCATGGCCAGATCACTGCCACCCCAATGCCACCGGCCTCTGCAGCAGCAGCATCATCAGGATTCTCAAATTCATCTCCCTTTCCATCATTGACTCCCATATTTCCACCAAGATCTATGAACACAATTCCCCATAGTCTCTATTTTACTTTGCCCAATGCACCTAGCAGCAACGCGTCTCAATACTATTATCAGGTTAAGCCCCAGCAGGCACCACCCTAG 1407 0.435 MLDLNLNDENSTDSTQNINSPMISENFPQTSWNQMVESGTSNSSIVNADGSSNNANDEDSCSTRVDDVFTFSFDILKMEGSNDVVTKEFFPVNGGGDDEGWCNNWKLQATSSFPAKNSSIDLSFNQNEEMKIVQPQQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYEDDLKQTKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIINNGREAVTNFEPSSYQGEMNPAATNEGGSQNLDLNLGIATPGHGPKENSGKFHSPSVPYTSSRMETNVLGTGNPSLKRLLVTEERHSLWNDMYPAFFPNEERADSIGKDPSKGLPNRAWQPHGQITATPMPPASAAAASSGFSNSSPFPSLTPIFPPRSMNTIPHSLYFTLPNAPSSNASQYYYQVKPQQAPP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01744 468 MobiDBLite consensus disorder prediction 1 59 - -
Trre8g01744 468 FunFam AP2-like ethylene-responsive transcription factor 151 210 - -
Trre8g01744 468 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Trre8g01744 468 Gene3D AP2/ERF domain 151 210 IPR036955 GO:0003700|GO:0006355
Trre8g01744 468 CDD AP2 243 288 IPR001471 GO:0003700|GO:0006355
Trre8g01744 468 MobiDBLite consensus disorder prediction 1 61 - -
Trre8g01744 468 SUPERFAMILY DNA-binding domain 243 287 IPR016177 GO:0003677
Trre8g01744 468 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 90 323 - -
Trre8g01744 468 MobiDBLite consensus disorder prediction 376 419 - -
Trre8g01744 468 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Trre8g01744 468 MobiDBLite consensus disorder prediction 132 153 - -
Trre8g01744 468 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Trre8g01744 468 SMART rav1_2 244 292 IPR001471 GO:0003700|GO:0006355
Trre8g01744 468 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01744 Trre-Chr8 13796189 13799486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01744 1 468 AP2-EREBP Transcription Factor Family AT5G60120 44.618 3.79e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g01744 AP2 6.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01744 K09284 - gmx:100788303 635.95