Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre8g01720 | ATGGACTCAACCGAAGACTTACACTTCTTGTTAACGGCGCAACGCCACGAACTAACGGCGGCGGAATCCATGGAAACCGATCTCGACTTCGCTTTCCGTCTCCAGTTACAAGAAGCCCTAGCCGCTTCTCTCACCGACCATCCTTCTTCCTCCACAGACGTTATTTTCGAAGAACCAATCATCGACGACGCCGTTTTGAACGCAACGTCTCTCCAATTAGAAGAGCTTGAAAAGATGGAGACGGAAATGCACGACAGGGAGGAGAGCGAGAGAGTAATGCGTGAGGCGAAGGATGATCTCAACCGTCGGATTCATGATCAGAAAATGGCGTCGCAGATTCTCAATTTTTCTGAGGAAGATTGGGAGGAATGGGGGGATAATTTCGAGAAACCGTTCGGGGAAGGTTGTTCGAAGAGTGGTAAAGATGAAGGTGCGGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAAGAAAGTGTGAGAGGTGAGAATTTTTCTGTGGCTGGGATTGGTGTTGCGGTTTGTGATTTGACTGATAATTTGATATTTGAAGTTTCTAAAGCTGTTGTTGGGAATGGAACAAGTAAAGTTGCTGTGGAACTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTCTTGCTTTGGATTTGAACAATGTTATTTGTTTTGGTGATTATTATCCACTTTTTCAATTTTTAAGTGGAAAATGGCCTGCAAAACAGAGGAAAATTGCTACGTTAGTTAATCAGGTGAATCTGCTTCAAAGAAAATTTGCATACTGCAGTCCAAGGCTAGTGGCGAGACAGGATCTGAAATTTGCATTAAAGCTTGCAAAAGATGCAATTGTTTCTCAGTCCACAAGGCCTGCTGAATCTAGCAGCGTAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGGAGGATGCCGATCATAGTCAATTTTTTTCGGTTGATGGTTGTCAACACAGGTATTGCTTTTCTTGCATGAAGCAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAATATGTCCTCATGAGGGATGCAAGAATGAACTTCTAGTTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAGTTGAAACTATGCAGCAACGAAAAATGGAAGCTTCAATTCCGCTTACTGAGAAAATTTACTGTCCTTATCCAAGATGCTCTGCACTAATGTCAAAAAGTGAAGTTTTAAACTACTCCAAAAGTCTTATGGGCTCCGAACATTCGTTACCCAAGAAATGCGTAAAATGTCACGGTCTTTTCTGTTTTGGCTGCAAGGTTCCTTGGCACAGTGGTATGACATGTTATACTTACAAAAGGTTGAATCCTAACCCTCCAGCAGATGATGTGAAGTTGAAGTTTCTGGCATCAAGGAGTCTTTGGAAGCAGTGCGTAAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGATGTGGTTATGAATTTTGCTATAAATGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTTCTTGTCCACTTTGGGAAGAAGACAATATTTGGTTACAAGATCGCCATGCTGAGTCAGAGGAAGATGAGGAAGATGAAGATGATGATTTTTATTATTAA | 1623 | 0.4177 | MDSTEDLHFLLTAQRHELTAAESMETDLDFAFRLQLQEALAASLTDHPSSSTDVIFEEPIIDDAVLNATSLQLEELEKMETEMHDREESERVMREAKDDLNRRIHDQKMASQILNFSEEDWEEWGDNFEKPFGEGCSKSGKDEGAVVRVYFKGLVSEESVRGENFSVAGIGVAVCDLTDNLIFEVSKAVVGNGTSKVAVELKALIEAFNAVLALDLNNVICFGDYYPLFQFLSGKWPAKQRKIATLVNQVNLLQRKFAYCSPRLVARQDLKFALKLAKDAIVSQSTRPAESSSVKSLKETCVICLEDADHSQFFSVDGCQHRYCFSCMKQHVEVKLLHGMVPICPHEGCKNELLVDSCRKFLTSKLVETMQQRKMEASIPLTEKIYCPYPRCSALMSKSEVLNYSKSLMGSEHSLPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNPPADDVKLKFLASRSLWKQCVKCNHMIELAEGCYHMTCRCGYEFCYKCGAEWKDKKATCSCPLWEEDNIWLQDRHAESEEDEEDEDDDFYY | 540 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre8g01720 | 540 | FunFam | RBR-type E3 ubiquitin transferase | 296 | 381 | - | - | |
| Trre8g01720 | 540 | SUPERFAMILY | RING/U-box | 454 | 517 | - | - | |
| Trre8g01720 | 540 | Pfam | IBR domain, a half RING-finger domain | 370 | 440 | IPR002867 | GO:0008270 | |
| Trre8g01720 | 540 | Pfam | IBR domain, a half RING-finger domain | 459 | 508 | IPR002867 | GO:0008270 | |
| Trre8g01720 | 540 | SUPERFAMILY | RING/U-box | 300 | 380 | - | - | |
| Trre8g01720 | 540 | Gene3D | - | 438 | 540 | - | - | |
| Trre8g01720 | 540 | SMART | ibrneu5 | 453 | 510 | IPR002867 | GO:0008270 | |
| Trre8g01720 | 540 | SMART | ibrneu5 | 368 | 440 | IPR002867 | GO:0008270 | |
| Trre8g01720 | 540 | Pfam | Reverse transcriptase-like | 166 | 280 | IPR002156 | GO:0003676|GO:0004523 | |
| Trre8g01720 | 540 | SUPERFAMILY | RING/U-box | 383 | 445 | - | - | |
| Trre8g01720 | 540 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 295 | 380 | IPR013083 | - | |
| Trre8g01720 | 540 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 269 | 516 | IPR031127 | GO:0004842|GO:0016567 | |
| Trre8g01720 | 540 | Coils | Coil | 79 | 99 | - | - | |
| Trre8g01720 | 540 | FunFam | RBR-type E3 ubiquitin transferase | 147 | 284 | - | - | |
| Trre8g01720 | 540 | ProSitePatterns | Zinc finger RING-type signature. | 319 | 328 | IPR017907 | - | |
| Trre8g01720 | 540 | CDD | Rcat_RBR_unk | 466 | 501 | - | - | |
| Trre8g01720 | 540 | CDD | BRcat_RBR_unk | 382 | 440 | - | - | |
| Trre8g01720 | 540 | ProSiteProfiles | Zinc finger RING-type profile. | 301 | 345 | IPR001841 | - | |
| Trre8g01720 | 540 | ProSiteProfiles | TRIAD supradomain profile. | 297 | 520 | IPR044066 | - | |
| Trre8g01720 | 540 | Gene3D | - | 147 | 287 | IPR036397 | GO:0003676 | |
| Trre8g01720 | 540 | FunFam | RBR-type E3 ubiquitin transferase | 438 | 540 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre8g01720 | Trre-Chr8 | 13576566 | 13580937 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre8g01720 | 148 | 499 | C3H Transcription Factor Family | AT2G19610 | 35.475 | 1.36e-65 | 217 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre8g01720 | - | - | gmx:100790037 | 794.267 |