Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01719 ATGGAGCAACAAGGCTATAGAAACATAAATGGTATGTTTCCTTATTATACTTCTTATCTCATTCCTGGTATGCTGCTATATAGGGTTCATGATCAGCCTATGTTGATGAGTGCTCAAGAGGGTTATGCTTATGGTCATGTCCTTGATCACCACTTTATTCTCAATCAACATAACATCAATTCCGATTCGACACAAACAAGACATTTTGAAGCTTCTAGAAGAAGGTTTAATTCTAATGTTGATAGAAATCAACCTAGAATCAATGCCTCGTCATCATCGGCTTATGCTCATGTCCAAGATGGTCACTTTATTCTTCATGAAAACATCGGTAGGGTGAACCAACAAGTTCCGACAAGAAGAAGAGACAATGGAGCTACTAGAAGACAGCATAATACCCATGTTGATAGAAATCATCAACCTAGGGTTAATACCCAAGATGCCTCCTCTTCGGCGACTTATGATCATTATGTCCAAGATGGCCACTTTATTCTTCATGAAAACATCGGTCAGGTGAACCAGCAAGTTCGAACAAGAAGAAGAGACATTGGAGGAGTTACTCAGAGACGATTTGATGCAAATGTTGAGAGAATTGTAATTCAAGAAGTATCGAAGGATTCGGAAGATATGACATGTTCCATTTGTCTTGTGGAGCTTTCAGTTGGGTCGGAAGCTATTCGATTGCCTAGTCCGTGTTTGCATGTCTATCACGAAGATTGTATTCTCAAGTGGTTCGATAAATCTAGCACATGTCCTTTGTGTCGGAGGCGTGTTTTGTGA 777 0.399 MEQQGYRNINGMFPYYTSYLIPGMLLYRVHDQPMLMSAQEGYAYGHVLDHHFILNQHNINSDSTQTRHFEASRRRFNSNVDRNQPRINASSSSAYAHVQDGHFILHENIGRVNQQVPTRRRDNGATRRQHNTHVDRNHQPRVNTQDASSSATYDHYVQDGHFILHENIGQVNQQVRTRRRDIGGVTQRRFDANVERIVIQEVSKDSEDMTCSICLVELSVGSEAIRLPSPCLHVYHEDCILKWFDKSSTCPLCRRRVL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01719 258 CDD RING-H2_PA-TM-RING 210 254 - -
Trre8g01719 258 ProSiteProfiles Zinc finger RING-type profile. 211 254 IPR001841 -
Trre8g01719 258 PANTHER SI:CH211-59O9.10 53 258 - -
Trre8g01719 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 258 IPR013083 -
Trre8g01719 258 SMART ringv_2 210 254 IPR011016 GO:0008270
Trre8g01719 258 SUPERFAMILY RING/U-box 204 257 - -
Trre8g01719 258 MobiDBLite consensus disorder prediction 121 140 - -
Trre8g01719 258 Pfam Ring finger domain 210 254 IPR001841 -
Trre8g01719 258 MobiDBLite consensus disorder prediction 116 149 - -
Trre8g01719 258 SMART ring_2 211 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01719 Trre-Chr8 13572584 13573360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01719 209 256 C3H Transcription Factor Family AT5G54990 47.917 1.19e-10 58.2